This puts caching in mentat_db, adds a reverse lookup capability for
unique attributes, and populates bidirectional caches with a single
SQL cursor walk.
Differentiate between begin_read and begin_uncached_read.
Note that we still allow toggling within InProgress, because there might be
transient local state that makes starting a new transaction impossible.
* Add TypedValue::instant(micros).
* Add From<f64> for TypedValue.
* Add lookup_values_for_attribute to Conn.
* Add q_explain to Queryable.
* Expose an iterator over FindSpec's columns.
* Export edn from mentat crate. Export QueryExecutionResult.
* Implement Display for Variable and Element.
* Introduce a `kw` macro.
This allows you to write:
```rust
kw!(:foo/bar)
```
instead of
```rust
NamespacedKeyword::new("foo", "bar")
```
… and it's more efficient, too.
Add `mentat::open`, eliminate use of `mentat_db` in some places.
Also move `now` into core, implement microsecond truncation.
This is so we don't return a more granular -- and thus subtly different --
timestamp in a `TxReport` than we put into the store.
Improve naming of read-only transactions.
Implement entid_for_type.
Simplify get_attribute.
Name ignored var in algebrizer.
Comment attribute_for_ident.
Make KnownEntid a core concept.
Expose lookup_value_for_attribute.
Implement HasSchema and a new query encapsulation on Conn.
Pre: export Queryable.
Pre: export AttributeBuilder from mentat_db.
Pre: fix module-level comment for tx/src/entities.rs.
Pre: rename some `to_` conversions to `into_`.
Pre: make AttributeBuilder::unique less verbose.
Pre: split out a HasSchema trait to abstract over Schema.
Pre: rename SchemaMap/schema_map to AttributeMap/attribute_map.
Pre: TypedValue/NamespacedKeyword conversions.
Pre: turn Unique and ValueType into TypedValue::Keyword.
Pre: export IntoResult.
Pre: export NamespacedKeyword from mentat_core.
Pre: use intern_set in tx.
Pre: add InternSet::len.
Pre: comment gardening.
Pre: remove inaccurate TODO from TxReport comment.
This was done using the following shell script:
```
find . -type f -not -path "*target*" \
'(' -name '*.rs' -o -name '*.md' -o -name '*.toml' ')' -print0 | \
xargs -0 sed -i '' -E 's/[[:space:]]*$//'
```
Which is admittedly imperfect, but manages to hit everything that was a problem in this repo.
* Pre: make FindQuery, FindSpec, and Element non-Clone.
* Pre: make query translator return a Result.
* Pre: make projection return a Result.
* Pre: refactor query parser in preparation for parsing aggregates.
* Pre: rename PredicateFn -> QueryFunction.
* Pre: expose more about bound variables from CC.
* Pre: move ValueTypeSet to core.
* Update some dependencies.
* Update rusqlite to 0.12.
* Update error-chain to a forked version that implements Sync.
* Fix some compiler warnings.
* Remove unused imports in tests.
* Parse errors no longer naturally print with the expected symbol.
* Pre: unused import in translate.rs.
* Part 2: take a dependency on rusqlite for query arguments.
* Part 1: flatten V2 schema into V1. Add UUID and URI.
Bump expected ident and bootstrap datom count in tests.
* Part 5: parse edn::Value::Uuid.
* Part 3: extend ValueType and TypedValue to include Uuid.
* Part 4: add Uuid to query arguments.
* Part 6: extend db to support Uuid.
* Part 8: add a tx-parser test for #f NaN and #uuid.
* Part 7: parse and algebrize UUIDs in queries.
* Part 1: parse #inst in EDN and throughout query engine.
* Part 3: handle instants in db.
* Part 2: instants never matches integers in queries.
* Part 4: use DateTime for tx_instants.
* Add a test for adding and querying UUIDs and instants.
* Review comments.
* Part 1: define ValueTypeSet.
We're going to use this instead of `HashSet<ValueType>` so that we can clearly express
the empty set and the set of all types, and also to encapsulate a switch to `EnumSet`."
* Part 2: use ValueTypeSet.
* Part 3: fix type expansion.
* Part 4: add a test for type extraction from nested `or`.
* Review comments.
* Review comments: simplify ValueTypeSet.
Part 1, core: use Rc for String and Keyword.
Part 2, query: use Rc for Variable.
Part 3, sql: use Rc for args in SQLiteQueryBuilder.
Part 4, query-algebrizer: use Rc.
Part 5, db: use Rc.
Part 6, query-parser: use Rc.
Part 7, query-projector: use Rc.
Part 8, query-translator: use Rc.
Part 9, top level: use Rc.
Part 10: intern Ident and IdentOrKeyword.
* Part 1 - Create as_edn_value function.
* Do not include defaults inside output.
* Pretty-printed by default. Do we want to make that a flag?
* Includes simple test just to make sure it works.
* Part 2 - only include ident if available.
* Part 3 - Remove spacing and newlines as unnecessary.
* Update function to build edn::Value directly rather than parsing from string
* Update test to actually test the functionality.
* Address review comments ncalexan.
* Rename `as_edn_value` to `to_edn_value`.
* Move `db/src/values.rs` to `core/src/values.rs` so we can reference inside `core/src/ib.rs`.
* Add `lazy-static` crate to core `Cargo.toml`
* Expose `values` as a public module from `core`.
* Update references to values in `db/src/bootstrap.rs` & `db/src/lib.rs`.
* Add new static vars for `DB_FULLTEXT`, `DB_INDEX` & `DB_IS_COMPONENT`.
* Use static vars exposed in `values` inside `to_edn_value`.
* Remove `db/id` as key in attribute output and use `entid` as `db/ident` if no `ident` is found for that `entid`.
* Update test to match new expected output.
* Add doc comment for function
* Address review comments ncalexan.
* Update function docstring to give clearer description of function.
* Do not all entid at all to output.
* Clean up code fetching ident (make it rustier).
* Address review comments rnewman.
* Extract out to new `to_edn_value` functions code for creating `edn::Value`\'s for `ValueType` and `Attribute`.
* Use `map()` to create schema edn value rather than a loop.
* Address review comments rnewman.
* pass cloned instance of ident to `Attribute::get_edn_value`.
* update `use` import for `edn`.
* remove unnecessary call when using ident as key on `associate_ident`.
* Fixed bug whereby we didn't differentiate between `db.index/value` and `db.index/identity` when generating `edn::Value`
* Add extra assert at the end to ensure we get the same output when we convert the same schema to edn multiple times
* Move check for type of uniqueness to `match` statement.
* Also use `iter` instead of `into_iter` when iterating schema map.
* Pre: Don't retract :db/ident in test.
Datomic (and eventually Mentat) don't allow to retract :db/ident in
this way, so this runs afoul of future work to support mutating
metadata.
* Pre: s/VALUETYPE/VALUE_TYPE/.
This is consistent with the capitalization (which is "valueType") and
the other identifier.
* Pre: Remove some single quotes from error output.
* Part 1: Make materialized views be uniform [e a v value_type_tag].
This looks ahead to a time when we could support arbitrary
user-defined materialized views. For now, the "idents" materialized
view is those datoms of the form [e :db/ident :namespaced/keyword] and
the "schema" materialized view is those datoms of the form [e a v]
where a is in a particular set of attributes that will become clear in
the following commits.
This change is not backwards compatible, so I'm removing the open
current (really, v2) test. It'll be re-instated when we get to
https://github.com/mozilla/mentat/issues/194.
* Pre: Map TypedValue::Ref to TypedValue::Keyword in debug output.
* Part 3: Separate `schema_to_mutate` from the `schema` used to interpret.
This is just to keep track of the expected changes during
bootstrapping. I want bootstrap metadata mutations to flow through
the same code path as metadata mutations during regular transactions;
by differentiating the schema used for interpretation from the schema
that will be updated I expect to be able to apply bootstrap metadata
mutations to an empty schema and have things like materialized views
created (using the regular code paths).
This commit has been re-ordered for conceptual clarity, but it won't
compile because it references the metadata module. It's possible to
make it compile -- the functionality is there in the schema module --
but it's not worth the rebasing effort until after review (and
possibly not even then, since we'll squash down to a single commit to
land).
* Part 2: Maintain entids separately from idents.
In order to support historical idents, we need to distinguish the
"current" map from entid -> ident from the "complete historical" map
ident -> entid. This is what Datomic does; in Datomic, an ident is
never retracted (although it can be replaced). This approach is an
important part of allowing multiple consumers to share a schema
fragment as it migrates forward.
This fixes a limitation of the Clojure implementation, which did not
handle historical idents across knowledge base close and re-open.
The "entids" materialized view is naturally a slice of the "datoms"
table. The "idents" materialized view is a slice of the
"transactions" table. I hope that representing in this way, and
casting the problem in this light, might generalize to future
materialized views.
* Pre: Add DiffSet.
* Part 4: Collect mutations to a `Schema`.
I haven't taken your review comment about consuming AttributeBuilder
during each fluent function. If you read my response and still want
this, I'm happy to do it in review.
* Part 5: Handle :db/ident and :db.{install,alter}/attribute.
This "loops" the committed datoms out of the SQL store and back
through the metadata (schema, but in future also partition map)
processor. The metadata processor updates the schema and produces a
report of what changed; that report is then used to update the SQL
store. That update includes:
- the materialized views ("entids", "idents", and "schema");
- if needed, a subset of the datoms themselves (as flags change).
I've left a TODO for handling attribute retraction in the cases that
it makes sense. I expect that to be straight-forward.
* Review comment: Rename DiffSet to AddRetractAlterSet.
Also adds a little more commentary and a simple test.
* Review comment: Use ToIdent trait.
* Review comment: partially revert "Part 2: Maintain entids separately from idents."
This reverts commit 23a91df9c35e14398f2ddbd1ba25315821e67401.
Following our discussion, this removes the "entids" materialized
view. The next commit will remove historical idents from the "idents"
materialized view.
* Post: Use custom Either rather than std::result::Result.
This is not necessary, but it was suggested that we might be paying an
overhead creating Err instances while using error_chain. That seems
not to be the case, but this change shows that we don't actually use
any of the Result helper methods, so there's no reason to overload
Result. This change might avoid some future confusion, so I'm going
to land it anyway.
Signed-off-by: Nick Alexander <nalexander@mozilla.com>
* Review comment: Don't preserve historical idents.
* Review comment: More prepared statements when updating materialized views.
* Post: Test altering :db/cardinality and :db/unique.
These tests fail due to a Datomic limitation, namely that the marker
flag :db.alter/attribute can only be asserted once for an attribute!
That is, [:db.part/db :db.alter/attribute :attribute] will only be
transacted at most once. Since older versions of Datomic required the
:db.alter/attribute flag, I can only imagine they either never wrote
:db.alter/attribute to the store, or they handled it specially. I'll
need to remove the marker flag system from Mentat in order to address
this fundamental limitation.
* Post: Remove some more single quotes from error output.
* Post: Add assert_transact! macro to unwrap safely.
I was finding it very difficult to track unwrapping errors while
making changes, due to an underlying Mac OS X symbolication issue that
makes running tests with RUST_BACKTRACE=1 so slow that they all time
out.
* Post: Don't expect or recognize :db.{install,alter}/attribute.
I had this all working... except we will never see a repeated
`[:db.part/db :db.alter/attribute :attribute]` assertion in the store!
That means my approach would let you alter an attribute at most one
time. It's not worth hacking around this; it's better to just stop
expecting (and recognizing) the marker flags. (We have all the data
to distinguish the various cases that we need without the marker
flags.)
This brings Mentat in line with the thrust of newer Datomic versions,
but isn't compatible with Datomic, because (if I understand correctly)
Datomic automatically adds :db.{install,alter}/attribute assertions to
transactions.
I haven't purged the corresponding :db/ident and schema fragments just
yet:
- we might want them back
- we might want them in order to upgrade v1 and v2 databases to the
new on-disk layout we're fleshing out (v3?).
* Post: Don't make :db/unique :db.unique/* imply :db/index true.
This patch avoids a potential bug with the "schema" materialized view.
If :db/unique :db.unique/value implies :db/index true, then what
happens when you _retract_ :db.unique/value? I think Datomic defines
this in some way, but I really want the "schema" materialized view to
be a slice of "datoms" and not have these sort of ambiguities and
persistent effects. Therefore, to ensure that we don't retract a
schema characteristic and accidentally change more than we intended
to, this patch stops having any schema characteristic imply any other
schema characteristic(s). To achieve that, I added an
Option<Unique::{Value,Identity}> type to Attribute; this helps with
this patch, and also looks ahead to when we allow to retract
:db/unique attributes.
* Post: Allow to retract :db/ident.
* Post: Include more details about invalid schema changes.
The tests use strings, so they hide the chained errors which do in
fact provide more detail.
* Review comment: Fix outdated comment.
* Review comment: s/_SET/_SQL_LIST/.
* Review comment: Use a sub-select for checking cardinality.
This might be faster in practice.
* Review comment: Put `attribute::Unique` into its own namespace.
* Pre: Implement batch [a v] pair lookup.
* Pre: Add InternSet for sharing ref-counted handles to large values.
* Pre: Derive more for Entity.
* Pre: Return DB from creating; return TxReport from transact.
I explicitly am not supporting opening existing databases yet, let
alone upgrading databases from earlier versions. That can follow fast
once basic transactions are supported.
* Pre: Parse string temporary ID entities; remove ValueOrLookupRef.
This adds TempId entities, but we can't disambiguate String temporary
IDs from values without the use of the schema, so there's no new value
branch. Similarly, we can't disambiguate lookup-ref values from two
element list values without a schema, so we remove this entirely.
We'll handle the ambiguity later in the transactor.
* Persist partitions to SQL store; allocate transaction ID. (#186)
* Post: Test upserting with vectors.
This converts an existing test to EDN:
84a80f40f5/test/datomish/db_test.cljc (L193).
* Implement tempid upsert resolution algorithm. (#184)
* Post: Separate Tx out of DB.
This is very preliminary, since we don't have a real connection type
to manage transactions and their metadata yet.
* Post: Comment on implementation choices in the transactor.
* Review comment: Put long use lists on separate lines.
* Review comment: Accept String: Borrow<S> instead of just String.
* Review comment: Address nits.
* Move Schema from mentat_db to mentat_core.
* Define SchemaMap in terms of Entid, not i64.
* Add Schema::{is_attribute,identifies_attribute}.
* Add pointer to #291.
* Don't pass around 64-bit pointers to 64-bit integers.
