Implement Deduplication based on Rabin Fingerprinting: work in progress.
Fix bug that prevented pipe mode from being used. Allow building without specialized allocator. Use basic optimize flag in debuig build.
This commit is contained in:
Moinak Ghosh
parent
8f5f531967
commit
cbf9728278
8 changed files with 477 additions and 122 deletions
7
Makefile
7
Makefile
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@ -55,8 +55,11 @@ LDLIBS = -ldl -lbz2 $(ZLIB_DIR) -lz -lm
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ifdef DEBUG
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LINK = g++ -m64 -pthread -msse3
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COMPILE = gcc -m64 -g -msse3 -c
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COMPILE_cpp = g++ -m64 -g -msse3 -c
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COMPILE = gcc -m64 -O -g -msse3 -c
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COMPILE_cpp = g++ -m64 -O -g -msse3 -c
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ifdef DEBUG_NO_SLAB
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CPPFLAGS += -DDEBUG_NO_SLAB
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endif
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else
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LINK = g++ -m64 -pthread -msse3
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COMPILE = gcc -m64 -O3 -msse3 -c
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31
allocator.c
31
allocator.c
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@ -48,6 +48,7 @@
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#include "utils.h"
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#include "allocator.h"
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#ifndef DEBUG_NO_SLAB
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/*
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* Number of slabs:
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* 256 bytes to 1M in power of 2 steps: 13
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@ -482,7 +483,37 @@ slab_free(void *p, void *address)
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pthread_mutex_unlock(&hbucket_locks[hindx]);
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free(address);
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fprintf(stderr, "Freed buf(%p) not in slab allocations!\n", address);
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abort();
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fflush(stderr);
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}
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}
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#else
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void
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slab_init() {}
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void
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slab_cleanup(int quiet) {}
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void
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*slab_alloc(void *p, size_t size)
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{
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return (malloc(size));
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}
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void
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*slab_calloc(void *p, size_t items, size_t size)
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{
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return (calloc(items, size));
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}
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void
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slab_free(void *p, void *address)
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{
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free(address);
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}
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int
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slab_cache_add(size_t size) {}
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#endif
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207
main.c
207
main.c
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@ -58,6 +58,7 @@ struct wdata {
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struct cmp_data **dary;
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int wfd;
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int nprocs;
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ssize_t chunksize;
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};
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@ -113,12 +114,7 @@ usage(void)
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" %s -d <compressed file> <target file>\n"
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"3) To operate as a pipe, read from stdin and write to stdout:\n"
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" %s -p ...\n"
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"4) To use Rabin Fingerprinting to adjust chunk boundaries:\n"
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" %s -r -c ...\n"
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" In this case <chunk_size> will specify the max chunk size and chunks\n"
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" will be variable-length delimited at the rabin boundary closest to\n"
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" <chunk_size> bytes. This should improve chunked compression.\n"
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" This option is obviously valid only when compressing.\n"
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"4) Rabin Deduplication: Work in progress.\n"
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"5) Number of threads can optionally be specified: -t <1 - 256 count>\n"
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"6) Pass '-M' to display memory allocator statistics\n"
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"7) Pass '-C' to display compression statistics\n\n",
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@ -185,6 +181,7 @@ redo:
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rseg = tdat->compressed_chunk + tdat->rbytes;
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_chunksize = ntohll(*((ssize_t *)rseg));
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}
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if (HDR & COMPRESSED) {
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rv = tdat->decompress(cseg, tdat->len_cmp, tdat->uncompressed_chunk,
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&_chunksize, tdat->level, tdat->data);
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@ -193,6 +190,28 @@ redo:
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}
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tdat->len_cmp = _chunksize;
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/* Rebuild chunk from dedup blocks. */
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if (enable_rabin_scan && (HDR & FLAG_DEDUP)) {
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rabin_context_t *rctx;
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uchar_t *tmp;
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rctx = tdat->rctx;
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reset_rabin_context(tdat->rctx);
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rctx->cbuf = tdat->compressed_chunk;
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rabin_inverse_dedup(rctx, tdat->uncompressed_chunk, &(tdat->len_cmp));
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if (!rctx->valid) {
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fprintf(stderr, "ERROR: Chunk %d, dedup recovery failed.\n", tdat->id);
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rv = -1;
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tdat->len_cmp = 0;
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goto cont;
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}
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_chunksize = tdat->len_cmp;
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tmp = tdat->uncompressed_chunk;
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tdat->uncompressed_chunk = tdat->compressed_chunk;
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tdat->compressed_chunk = tmp;
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tdat->cmp_seg = tdat->uncompressed_chunk;
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}
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if (rv == -1) {
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tdat->len_cmp = 0;
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fprintf(stderr, "ERROR: Chunk %d, decompression failed.\n", tdat->id);
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@ -221,9 +240,10 @@ cont:
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* ----------------------
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* File Header:
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* Algorithm string: 8 bytes.
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* Version number: 4 bytes.
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* Version number: 2 bytes.
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* Global Flags: 2 bytes.
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* Chunk size: 8 bytes.
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* Compression Level: 4 bytes;
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* Compression Level: 4 bytes.
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*
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* Chunk Header:
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* Compressed length: 8 bytes.
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@ -232,12 +252,15 @@ cont:
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*
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* Chunk Flags, 8 bits:
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* I I I I I I I I
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* | | | |
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* | | | `- 0 - Uncompressed
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* | | | 1 - Compressed
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* | | |
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* | | `------------- 1 - Bzip2 (Adaptive Mode)
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* | `---------------- 1 - Lzma (Adaptive Mode)
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* | | | | |
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* | '-----' | `- 0 - Uncompressed
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* | | | 1 - Compressed
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* | | |
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* | | `---- 1 - Chunk was Deduped
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* | |
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* | | 1 - Bzip2 (Adaptive Mode)
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* | `---------------- 2 - Lzma (Adaptive Mode)
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* | 3 - PPMD (Adaptive Mode)
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* |
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* `---------------------- 1 - Last Chunk flag
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*
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@ -255,12 +278,16 @@ start_decompress(const char *filename, const char *to_filename)
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struct wdata w;
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int compfd = -1, i, p;
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int uncompfd = -1, err, np, bail;
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int version, nprocs, thread = 0, level;
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int nprocs, thread = 0, level;
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short version, flags;
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ssize_t chunksize, compressed_chunksize;
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struct cmp_data **dary, *tdat;
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pthread_t writer_thr;
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err = 0;
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flags = 0;
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thread = 0;
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/*
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* Open files and do sanity checks.
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*/
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@ -303,17 +330,19 @@ start_decompress(const char *filename, const char *to_filename)
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}
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if (Read(compfd, &version, sizeof (version)) < sizeof (version) ||
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Read(compfd, &flags, sizeof (flags)) < sizeof (flags) ||
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Read(compfd, &chunksize, sizeof (chunksize)) < sizeof (chunksize) ||
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Read(compfd, &level, sizeof (level)) < sizeof (level)) {
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perror("Read: ");
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UNCOMP_BAIL;
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}
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version = ntohl(version);
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version = ntohs(version);
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flags = ntohs(flags);
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chunksize = ntohll(chunksize);
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level = ntohl(level);
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if (version != 1) {
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if (version != VERSION) {
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fprintf(stderr, "Unsupported version: %d\n", version);
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err = 1;
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goto uncomp_done;
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@ -322,6 +351,10 @@ start_decompress(const char *filename, const char *to_filename)
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compressed_chunksize = chunksize + (chunksize >> 6) + sizeof (uint64_t)
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+ sizeof (chunksize);
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if (flags & FLAG_DEDUP) {
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enable_rabin_scan = 1;
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}
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if (nthreads == 0)
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nprocs = sysconf(_SC_NPROCESSORS_ONLN);
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else
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@ -346,7 +379,11 @@ start_decompress(const char *filename, const char *to_filename)
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fprintf(stderr, "Out of memory\n");
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UNCOMP_BAIL;
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}
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tdat->uncompressed_chunk = (uchar_t *)slab_alloc(NULL, chunksize);
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if (enable_rabin_scan)
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tdat->uncompressed_chunk = (uchar_t *)slab_alloc(NULL,
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compressed_chunksize + CHDR_SZ);
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else
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tdat->uncompressed_chunk = (uchar_t *)slab_alloc(NULL, chunksize);
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if (!tdat->uncompressed_chunk) {
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fprintf(stderr, "Out of memory\n");
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UNCOMP_BAIL;
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@ -362,6 +399,10 @@ start_decompress(const char *filename, const char *to_filename)
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sem_init(&(tdat->write_done_sem), 0, 1);
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if (_init_func)
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_init_func(&(tdat->data), &(tdat->level), chunksize);
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if (enable_rabin_scan)
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tdat->rctx = create_rabin_context(chunksize);
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else
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tdat->rctx = NULL;
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if (pthread_create(&(tdat->thr), NULL, perform_decompress,
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(void *)tdat) != 0) {
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perror("Error in thread creation: ");
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@ -373,6 +414,7 @@ start_decompress(const char *filename, const char *to_filename)
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w.dary = dary;
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w.wfd = uncompfd;
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w.nprocs = nprocs;
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w.chunksize = chunksize;
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if (pthread_create(&writer_thr, NULL, writer_thread, (void *)(&w)) != 0) {
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perror("Error in thread creation: ");
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UNCOMP_BAIL;
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@ -480,6 +522,9 @@ uncomp_done:
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slab_free(NULL, dary[i]->compressed_chunk);
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if (_deinit_func)
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_deinit_func(&(tdat->data));
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if (enable_rabin_scan) {
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destroy_rabin_context(dary[i]->rctx);
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}
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slab_free(NULL, dary[i]);
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}
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slab_free(NULL, dary);
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@ -507,11 +552,31 @@ redo:
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return (0);
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}
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/*
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* Compute checksum of original uncompressed chunk.
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*/
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tdat->crc64 = lzma_crc64(tdat->uncompressed_chunk, tdat->rbytes, 0);
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/* Perform Dedup if enabled. */
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if (enable_rabin_scan) {
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rabin_context_t *rctx;
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ssize_t rbytes;
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/*
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* Compute checksum of original uncompressed chunk.
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*/
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tdat->crc64 = lzma_crc64(tdat->cmp_seg, tdat->rbytes, 0);
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rctx = tdat->rctx;
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rbytes = tdat->rbytes;
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reset_rabin_context(tdat->rctx);
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rctx->cbuf = tdat->uncompressed_chunk;
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rabin_dedup(tdat->rctx, tdat->cmp_seg, &(tdat->rbytes), 0);
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if (!rctx->valid) {
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memcpy(tdat->uncompressed_chunk, tdat->cmp_seg, rbytes);
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tdat->rbytes = rbytes;
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}
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} else {
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/*
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* Compute checksum of original uncompressed chunk.
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*/
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tdat->crc64 = lzma_crc64(tdat->uncompressed_chunk, tdat->rbytes, 0);
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}
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_chunksize = tdat->rbytes;
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rv = tdat->compress(tdat->uncompressed_chunk, tdat->rbytes,
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tdat->compressed_chunk + CHDR_SZ, &_chunksize, tdat->level,
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@ -533,6 +598,9 @@ redo:
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type = COMPRESSED;
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}
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if (enable_rabin_scan && tdat->rctx->valid) {
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type |= CHUNK_FLAG_DEDUP;
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}
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/*
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* Insert compressed chunk length and CRC64 checksum into
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* chunk header.
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@ -548,7 +616,7 @@ redo:
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type |= (rv << 4);
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/*
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* If last chunk is less than chunksize, store this length as well.
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* If chunk is less than max chunksize, store this length as well.
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*/
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if (tdat->rbytes < tdat->chunksize) {
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type |= CHSIZE_MASK;
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@ -615,15 +683,15 @@ do_cancel:
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*/
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#define COMP_BAIL err = 1; goto comp_done
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static void
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void
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start_compress(const char *filename, uint64_t chunksize, int level)
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{
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struct wdata w;
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char tmpfile[MAXPATHLEN];
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char tmpfile1[MAXPATHLEN];
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char to_filename[MAXPATHLEN];
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ssize_t compressed_chunksize;
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ssize_t n_chunksize, rbytes, rabin_count;
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int version;
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ssize_t n_chunksize, rbytes;
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short version, flags;
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struct stat sbuf;
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int compfd = -1, uncompfd = -1, err;
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int i, thread = 0, bail;
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@ -647,11 +715,14 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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compressed_chunksize = chunksize + (chunksize >> 6) +
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sizeof (chunksize) + sizeof (uint64_t) + sizeof (chunksize);
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err = 0;
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flags = 0;
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thread = 0;
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slab_cache_add(chunksize);
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slab_cache_add(compressed_chunksize + CHDR_SZ);
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slab_cache_add(sizeof (struct cmp_data));
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if (enable_rabin_scan) {
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rctx = create_rabin_context();
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if (rctx == NULL)
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err_exit(0, "Initializing Rabin Polynomial failed\n");
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flags |= FLAG_DEDUP;
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}
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/* A host of sanity checks. */
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@ -687,11 +758,11 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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* the end. The target file name is same as original file with the '.pz'
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* extension appended.
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*/
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strcpy(tmpfile, filename);
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strcpy(tmpfile, dirname(tmpfile));
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strcat(tmpfile, "/.pcompXXXXXX");
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strcpy(tmpfile1, filename);
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strcpy(tmpfile1, dirname(tmpfile1));
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strcat(tmpfile1, "/.pcompXXXXXX");
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snprintf(to_filename, sizeof (to_filename), "%s" COMP_EXTN, filename);
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if ((compfd = mkstemp(tmpfile)) == -1) {
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if ((compfd = mkstemp(tmpfile1)) == -1) {
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perror("mkstemp ");
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COMP_BAIL;
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}
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@ -717,12 +788,12 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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nprocs = nthreads;
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fprintf(stderr, "Scaling to %d threads\n", nprocs);
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slab_cache_add(chunksize);
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slab_cache_add(compressed_chunksize + CHDR_SZ);
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slab_cache_add(sizeof (struct cmp_data));
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dary = (struct cmp_data **)slab_alloc(NULL, sizeof (struct cmp_data *) * nprocs);
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cread_buf = (uchar_t *)slab_alloc(NULL, chunksize);
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if (enable_rabin_scan)
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cread_buf = (uchar_t *)slab_alloc(NULL, compressed_chunksize + CHDR_SZ);
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else
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cread_buf = (uchar_t *)slab_alloc(NULL, chunksize);
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if (!cread_buf) {
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fprintf(stderr, "Out of memory\n");
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COMP_BAIL;
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@ -756,6 +827,10 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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sem_init(&(tdat->write_done_sem), 0, 1);
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if (_init_func)
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_init_func(&(tdat->data), &(tdat->level), chunksize);
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if (enable_rabin_scan)
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tdat->rctx = create_rabin_context(chunksize);
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else
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tdat->rctx = NULL;
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if (pthread_create(&(tdat->thr), NULL, perform_compress,
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(void *)tdat) != 0) {
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@ -779,12 +854,15 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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*/
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memset(cread_buf, 0, ALGO_SZ);
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strncpy(cread_buf, algo, ALGO_SZ);
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version = htonl(VERSION);
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version = htons(VERSION);
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flags = htons(flags);
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n_chunksize = htonll(chunksize);
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level = htonl(level);
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pos = cread_buf + ALGO_SZ;
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memcpy(pos, &version, sizeof (version));
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pos += sizeof (version);
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memcpy(pos, &flags, sizeof (flags));
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pos += sizeof (flags);
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memcpy(pos, &n_chunksize, sizeof (n_chunksize));
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pos += sizeof (n_chunksize);
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memcpy(pos, &level, sizeof (level));
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@ -808,8 +886,8 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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/*
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* Read the first chunk into a spare buffer (a simple double-buffering).
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*/
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rabin_count = 0;
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rbytes = Read2(uncompfd, cread_buf, chunksize, &rabin_count, rctx);
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rbytes = Read(uncompfd, cread_buf, chunksize);
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while (!bail) {
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uchar_t *tmp;
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@ -825,18 +903,23 @@ start_compress(const char *filename, uint64_t chunksize, int level)
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/*
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* Once previous chunk is done swap already read buffer and
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* it's size into the thread data.
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* Normally it goes into uncompressed_chunk, because that's what it is.
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* With dedup enabled however, we do some jugglery to save additional
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* memory usage and avoid a memcpy, so it goes into the compressed_chunk
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* area:
|
||||
* cmp_seg -> dedup -> uncompressed_chunk -> compression -> cmp_seg
|
||||
*/
|
||||
tdat->id = chunk_num;
|
||||
tmp = tdat->uncompressed_chunk;
|
||||
tdat->uncompressed_chunk = cread_buf;
|
||||
cread_buf = tmp;
|
||||
tdat->rbytes = rbytes;
|
||||
if (rabin_count) {
|
||||
memcpy(cread_buf,
|
||||
tdat->uncompressed_chunk + rabin_count,
|
||||
rbytes - rabin_count);
|
||||
tdat->rbytes = rabin_count;
|
||||
rabin_count = rbytes - rabin_count;
|
||||
if (enable_rabin_scan) {
|
||||
tmp = tdat->cmp_seg;
|
||||
tdat->cmp_seg = cread_buf;
|
||||
cread_buf = tmp;
|
||||
tdat->compressed_chunk = tdat->cmp_seg + sizeof (chunksize) + sizeof (uint64_t);
|
||||
} else {
|
||||
tmp = tdat->uncompressed_chunk;
|
||||
tdat->uncompressed_chunk = cread_buf;
|
||||
cread_buf = tmp;
|
||||
}
|
||||
if (rbytes < chunksize) {
|
||||
if (rbytes < 0) {
|
||||
|
|
@ -857,7 +940,7 @@ start_compress(const char *filename, uint64_t chunksize, int level)
|
|||
* Read the next buffer we want to process while previous
|
||||
* buffer is in progress.
|
||||
*/
|
||||
rbytes = Read2(uncompfd, cread_buf, chunksize, &rabin_count, rctx);
|
||||
rbytes = Read(uncompfd, cread_buf, chunksize);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -887,7 +970,7 @@ comp_done:
|
|||
|
||||
if (err) {
|
||||
if (compfd != -1 && !pipe_mode)
|
||||
unlink(tmpfile);
|
||||
unlink(tmpfile1);
|
||||
fprintf(stderr, "Error compressing file: %s\n", filename);
|
||||
} else {
|
||||
/*
|
||||
|
|
@ -912,9 +995,9 @@ comp_done:
|
|||
if (fchown(compfd, sbuf.st_uid, sbuf.st_gid) == -1)
|
||||
perror("chown ");
|
||||
|
||||
if (rename(tmpfile, to_filename) == -1) {
|
||||
if (rename(tmpfile1, to_filename) == -1) {
|
||||
perror("Cannot rename temporary file ");
|
||||
unlink(tmpfile);
|
||||
unlink(tmpfile1);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -922,6 +1005,9 @@ comp_done:
|
|||
for (i = 0; i < nprocs; i++) {
|
||||
slab_free(NULL, dary[i]->uncompressed_chunk);
|
||||
slab_free(NULL, dary[i]->cmp_seg);
|
||||
if (enable_rabin_scan) {
|
||||
destroy_rabin_context(dary[i]->rctx);
|
||||
}
|
||||
if (_deinit_func)
|
||||
_deinit_func(&(dary[i]->data));
|
||||
slab_free(NULL, dary[i]);
|
||||
|
|
@ -982,7 +1068,7 @@ init_algo(const char *algo, int bail)
|
|||
_stats_func = ppmd_stats;
|
||||
rv = 0;
|
||||
|
||||
/* adapt2 and adapt ordering of the checks matters here. */
|
||||
/* adapt2 and adapt ordering of the checks matter here. */
|
||||
} else if (memcmp(algorithm, "adapt2", 6) == 0) {
|
||||
_compress_func = adapt_compress;
|
||||
_decompress_func = adapt_decompress;
|
||||
|
|
@ -1069,9 +1155,9 @@ main(int argc, char *argv[])
|
|||
hide_cmp_stats = 0;
|
||||
break;
|
||||
|
||||
case 'r':
|
||||
enable_rabin_scan = 1;
|
||||
break;
|
||||
//case 'r':
|
||||
//enable_rabin_scan = 1;
|
||||
//break;
|
||||
|
||||
case '?':
|
||||
default:
|
||||
|
|
@ -1097,7 +1183,7 @@ main(int argc, char *argv[])
|
|||
}
|
||||
|
||||
if (enable_rabin_scan && !do_compress) {
|
||||
fprintf(stderr, "Rabin Fingerprinting is only used during compression.\n");
|
||||
fprintf(stderr, "Rabin Deduplication is only used during compression.\n");
|
||||
usage();
|
||||
exit(1);
|
||||
}
|
||||
|
|
@ -1138,7 +1224,8 @@ main(int argc, char *argv[])
|
|||
usage();
|
||||
exit(1);
|
||||
}
|
||||
} else {
|
||||
} else if (num_rem > 2) {
|
||||
fprintf(stderr, "Too many filenames.\n");
|
||||
usage();
|
||||
exit(1);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -32,10 +32,13 @@
|
|||
extern "C" {
|
||||
#endif
|
||||
|
||||
#include <rabin_polynomial.h>
|
||||
|
||||
#define CHDR_SZ 1
|
||||
#define ALGO_SZ 8
|
||||
#define MIN_CHUNK 2048
|
||||
#define VERSION 1
|
||||
#define VERSION 2
|
||||
#define FLAG_DEDUP 1
|
||||
|
||||
#define COMPRESSED 1
|
||||
#define UNCOMPRESSED 0
|
||||
|
|
@ -45,6 +48,7 @@ extern "C" {
|
|||
#define COMPRESS_LZMA 1
|
||||
#define COMPRESS_BZIP2 2
|
||||
#define COMPRESS_PPMD 3
|
||||
#define CHUNK_FLAG_DEDUP 2
|
||||
#define COMP_EXTN ".pz"
|
||||
|
||||
/* Pointer type for compress and decompress functions. */
|
||||
|
|
@ -106,6 +110,7 @@ struct cmp_data {
|
|||
uchar_t *cmp_seg;
|
||||
uchar_t *compressed_chunk;
|
||||
uchar_t *uncompressed_chunk;
|
||||
rabin_context_t *rctx;
|
||||
ssize_t rbytes;
|
||||
ssize_t chunksize;
|
||||
ssize_t len_cmp;
|
||||
|
|
|
|||
|
|
@ -62,29 +62,47 @@
|
|||
#include <allocator.h>
|
||||
#include <utils.h>
|
||||
|
||||
// CRC64 pieces from LZMA's implementation -----------------
|
||||
#include <crc_macros.h>
|
||||
|
||||
#ifdef WORDS_BIGENDIAN
|
||||
# define A1(x) ((x) >> 56)
|
||||
#else
|
||||
# define A1 A
|
||||
#endif
|
||||
|
||||
extern const uint64_t lzma_crc64_table[4][256];
|
||||
// ---------------------------------------------------------
|
||||
|
||||
#include "rabin_polynomial.h"
|
||||
|
||||
unsigned int rabin_polynomial_max_block_size = RAB_POLYNOMIAL_AVG_BLOCK_SIZE;
|
||||
unsigned int rabin_polynomial_max_block_size = RAB_POLYNOMIAL_MAX_BLOCK_SIZE;
|
||||
unsigned int rabin_polynomial_min_block_size = RAB_POLYNOMIAL_MIN_BLOCK_SIZE;
|
||||
unsigned int rabin_avg_block_mask = RAB_POLYNOMIAL_AVG_BLOCK_MASK;
|
||||
|
||||
/*
|
||||
* Initialize the algorithm with the default params. Not thread-safe.
|
||||
* Initialize the algorithm with the default params.
|
||||
*/
|
||||
rabin_context_t *
|
||||
create_rabin_context() {
|
||||
create_rabin_context(uint64_t chunksize) {
|
||||
rabin_context_t *ctx;
|
||||
unsigned char *current_window_data;
|
||||
unsigned int blknum;
|
||||
|
||||
blknum = chunksize / rabin_polynomial_min_block_size;
|
||||
if (chunksize % rabin_polynomial_min_block_size)
|
||||
blknum++;
|
||||
|
||||
ctx = (rabin_context_t *)slab_alloc(NULL, sizeof (rabin_context_t));
|
||||
current_window_data = slab_alloc(NULL, RAB_POLYNOMIAL_WIN_SIZE);
|
||||
if(ctx == NULL || current_window_data == NULL) {
|
||||
ctx->blocks = (rabin_blockentry_t *)slab_alloc(NULL,
|
||||
blknum * rabin_polynomial_min_block_size);
|
||||
if(ctx == NULL || current_window_data == NULL || ctx->blocks == NULL) {
|
||||
fprintf(stderr,
|
||||
"Could not allocate rabin polynomial context, out of memory\n");
|
||||
return (NULL);
|
||||
}
|
||||
|
||||
memset(current_window_data, 0, RAB_POLYNOMIAL_WIN_SIZE);
|
||||
ctx->current_window_data = current_window_data;
|
||||
|
||||
/*
|
||||
* We should compute the power for the window size.
|
||||
* static uint64_t polynomial_pow;
|
||||
|
|
@ -96,45 +114,80 @@ create_rabin_context() {
|
|||
* x * polynomial_pow can we written as x << RAB_POLYNOMIAL_WIN_SIZE
|
||||
*/
|
||||
|
||||
ctx->current_window_data = current_window_data;
|
||||
reset_rabin_context(ctx);
|
||||
return (ctx);
|
||||
}
|
||||
|
||||
void
|
||||
reset_rabin_context(rabin_context_t *ctx)
|
||||
{
|
||||
memset(ctx->current_window_data, 0, RAB_POLYNOMIAL_WIN_SIZE);
|
||||
ctx->window_pos = 0;
|
||||
ctx->cur_roll_checksum = 0;
|
||||
return (ctx);
|
||||
ctx->cur_checksum = 0;
|
||||
}
|
||||
|
||||
void
|
||||
destroy_rabin_context(rabin_context_t *ctx)
|
||||
{
|
||||
slab_free(NULL, ctx->current_window_data);
|
||||
slab_free(NULL, ctx->blocks);
|
||||
slab_free(NULL, ctx);
|
||||
}
|
||||
|
||||
/**
|
||||
* Given a buffer compute all the rabin chunks and return the end offset of the
|
||||
* last chunk in the buffer. The last chunk may not end at the buffer end. The
|
||||
* bytes till the last chunk end is used as the compression chunk and remaining
|
||||
* bytes are carried over to the next chunk.
|
||||
/*
|
||||
* Checksum Comparator for qsort
|
||||
*/
|
||||
ssize_t
|
||||
scan_rabin_chunks(rabin_context_t *ctx, void *buf, ssize_t size, ssize_t offset)
|
||||
static int
|
||||
cmpblks(const void *a, const void *b)
|
||||
{
|
||||
size_t i, length, last_offset;
|
||||
rabin_blockentry_t *a1 = (rabin_blockentry_t *)a;
|
||||
rabin_blockentry_t *b1 = (rabin_blockentry_t *)b;
|
||||
|
||||
length = 0;
|
||||
if (a1->checksum < b1->checksum)
|
||||
return (-1);
|
||||
else if (a1->checksum == b1->checksum)
|
||||
return (0);
|
||||
else if (a1->checksum > b1->checksum)
|
||||
return (1);
|
||||
}
|
||||
|
||||
/**
|
||||
* Perform Deduplication based on Rabin Fingerprinting. A 32-byte window is used for
|
||||
* the rolling checksum and dedup blocks vary in size from 4K-128K.
|
||||
*/
|
||||
void
|
||||
rabin_dedup(rabin_context_t *ctx, uchar_t *buf, ssize_t *size, ssize_t offset)
|
||||
{
|
||||
ssize_t i, last_offset;
|
||||
unsigned int blknum;
|
||||
char *buf1 = (char *)buf;
|
||||
unsigned int length;
|
||||
ssize_t overhead;
|
||||
|
||||
length = offset;
|
||||
last_offset = 0;
|
||||
blknum = 0;
|
||||
ctx->valid = 0;
|
||||
|
||||
for (i=offset; i<size; i++) {
|
||||
char cur_byte = *((char *)(buf+i));
|
||||
if (*size < RAB_POLYNOMIAL_AVG_BLOCK_SIZE) return;
|
||||
for (i=offset; i<*size; i++) {
|
||||
char cur_byte = buf1[i];
|
||||
uint64_t pushed_out = ctx->current_window_data[ctx->window_pos];
|
||||
ctx->current_window_data[ctx->window_pos] = cur_byte;
|
||||
/*
|
||||
* We want to do:
|
||||
* cur_roll_checksum = cur_roll_checksum * RAB_POLYNOMIAL_CONST + cur_byte;
|
||||
* cur_roll_checksum -= pushed_out * polynomial_pow;
|
||||
* cur_checksum = cur_checksum * RAB_POLYNOMIAL_CONST + cur_byte;
|
||||
*
|
||||
* However since RAB_POLYNOMIAL_CONST == 2, we use shifts.
|
||||
*/
|
||||
ctx->cur_roll_checksum = (ctx->cur_roll_checksum << 1) + cur_byte;
|
||||
ctx->cur_roll_checksum -= (pushed_out << RAB_POLYNOMIAL_WIN_SIZE);
|
||||
// CRC64 Calculation swiped from LZMA
|
||||
ctx->cur_checksum = lzma_crc64_table[0][cur_byte ^ A1(ctx->cur_checksum)] ^ S8(ctx->cur_checksum);
|
||||
|
||||
ctx->window_pos++;
|
||||
length++;
|
||||
|
|
@ -142,15 +195,177 @@ scan_rabin_chunks(rabin_context_t *ctx, void *buf, ssize_t size, ssize_t offset)
|
|||
if (ctx->window_pos == RAB_POLYNOMIAL_WIN_SIZE) // Loop back around
|
||||
ctx->window_pos=0;
|
||||
|
||||
if (length < rabin_polynomial_min_block_size) continue;
|
||||
|
||||
// If we hit our special value or reached the max block size update block offset
|
||||
if ((ctx->cur_roll_checksum & RAB_POLYNOMIAL_AVG_BLOCK_MASK) == RAB_POLYNOMIAL_CONST ||
|
||||
if ((ctx->cur_roll_checksum & rabin_avg_block_mask) == RAB_POLYNOMIAL_CONST ||
|
||||
length >= rabin_polynomial_max_block_size) {
|
||||
ctx->blocks[blknum].offset = last_offset;
|
||||
ctx->blocks[blknum].index = blknum; // Need to store for sorting
|
||||
ctx->blocks[blknum].checksum = ctx->cur_checksum;
|
||||
ctx->blocks[blknum].length = length;
|
||||
|
||||
blknum++;
|
||||
ctx->cur_checksum = 0;
|
||||
last_offset = i+1;
|
||||
length = 0;
|
||||
}
|
||||
}
|
||||
if (last_offset == 0) last_offset = size;
|
||||
|
||||
return last_offset;
|
||||
// If we found at least a few chunks, perform dedup.
|
||||
if (blknum > 2) {
|
||||
uint64_t prev_cksum;
|
||||
unsigned int blk, prev_length;
|
||||
ssize_t pos, matches;
|
||||
int valid = 1;
|
||||
char *tmp, *prev_offset;
|
||||
unsigned int *blkarr, prev_blk;
|
||||
|
||||
// Insert the last left-over trailing bytes, if any, into a block.
|
||||
if (last_offset < *size) {
|
||||
ctx->blocks[blknum].offset = last_offset;
|
||||
ctx->blocks[blknum].index = blknum;
|
||||
ctx->blocks[blknum].checksum = ctx->cur_checksum;
|
||||
ctx->blocks[blknum].length = *size - last_offset;
|
||||
blknum++;
|
||||
ctx->cur_checksum = 0;
|
||||
last_offset = *size;
|
||||
}
|
||||
|
||||
overhead = blknum * RABIN_ENTRY_SIZE + RABIN_HDR_SIZE;
|
||||
prev_cksum = 0;
|
||||
prev_length = 0;
|
||||
prev_offset = 0;
|
||||
pos = overhead;
|
||||
|
||||
/*
|
||||
* Now sort the block array based on checksums. This will bring virtually
|
||||
* all similar block entries together. Effectiveness depends on how strong
|
||||
* our checksum is. We are using CRC64 here so we should be pretty okay.
|
||||
* TODO: Test with a heavily optimized MD5 (from OpenSSL?) later.
|
||||
*/
|
||||
qsort(ctx->blocks, blknum, sizeof (rabin_blockentry_t), cmpblks);
|
||||
blkarr = (unsigned int *)(ctx->cbuf + RABIN_HDR_SIZE);
|
||||
matches = 0;
|
||||
|
||||
/*
|
||||
* Now make a pass through the sorted block array making identical blocks
|
||||
* point to the first identical block entry. A simple Run Length Encoding
|
||||
* sort of. Checksums, length and contents (memcmp()) must match for blocks
|
||||
* to be considered identical.
|
||||
* The block index in the chunk is initialized with pointers into the
|
||||
* sorted block array.
|
||||
*/
|
||||
for (blk = 0; blk < blknum; blk++) {
|
||||
blkarr[ctx->blocks[blk].index] = blk;
|
||||
|
||||
if (blk > 0 && ctx->blocks[blk].checksum == prev_cksum &&
|
||||
ctx->blocks[blk].length == prev_length &&
|
||||
memcmp(prev_offset, buf1 + ctx->blocks[blk].offset, prev_length) == 0) {
|
||||
ctx->blocks[blk].length = 0;
|
||||
ctx->blocks[blk].index = prev_blk;
|
||||
matches += prev_length;
|
||||
continue;
|
||||
}
|
||||
|
||||
prev_offset = buf1 + ctx->blocks[blk].offset;
|
||||
prev_cksum = ctx->blocks[blk].checksum;
|
||||
prev_length = ctx->blocks[blk].length;
|
||||
prev_blk = ctx->blocks[blk].index;
|
||||
}
|
||||
|
||||
if (matches < overhead) {
|
||||
ctx->valid = 0;
|
||||
return;
|
||||
}
|
||||
/*
|
||||
* Another pass, this time through the block index in the chunk. We insert
|
||||
* block length into unique block entries. For block entries that are
|
||||
* identical with another one we store the index number + max rabin block length.
|
||||
* This way we can differentiate between a unique block length entry and a
|
||||
* pointer to another block without needing a separate flag.
|
||||
*/
|
||||
for (blk = 0; blk < blknum; blk++) {
|
||||
rabin_blockentry_t *be;
|
||||
|
||||
/*
|
||||
* If blocks are overflowing the allowed chunk size then dedup did not
|
||||
* help at all. We invalidate the dedup operation.
|
||||
*/
|
||||
if (pos > last_offset) {
|
||||
valid = 0;
|
||||
break;
|
||||
}
|
||||
be = &(ctx->blocks[blkarr[blk]]);
|
||||
if (be->length > 0) {
|
||||
prev_offset = buf1 + be->offset;
|
||||
memcpy(ctx->cbuf + pos, prev_offset, be->length);
|
||||
pos += be->length;
|
||||
blkarr[blk] = htonl(be->length);
|
||||
} else {
|
||||
blkarr[blk] = htonl(RAB_POLYNOMIAL_MAX_BLOCK_SIZE + be->index + 1);
|
||||
}
|
||||
}
|
||||
|
||||
cont:
|
||||
if (valid) {
|
||||
*((unsigned int *)(ctx->cbuf)) = htonl(blknum);
|
||||
*((ssize_t *)(ctx->cbuf + sizeof (unsigned int))) = htonll(*size);
|
||||
*size = pos;
|
||||
ctx->valid = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void
|
||||
rabin_inverse_dedup(rabin_context_t *ctx, uchar_t *buf, ssize_t *size)
|
||||
{
|
||||
unsigned int blknum, blk, oblk, len;
|
||||
unsigned int *blkarr;
|
||||
ssize_t orig_size, sz;
|
||||
ssize_t overhead, pos1, i;
|
||||
uchar_t *pos2;
|
||||
|
||||
blknum = ntohl(*((unsigned int *)(buf)));
|
||||
orig_size = ntohll(*((ssize_t *)(buf + sizeof (unsigned int))));
|
||||
blkarr = (unsigned int *)(buf + RABIN_HDR_SIZE);
|
||||
overhead = blknum * RABIN_ENTRY_SIZE + RABIN_HDR_SIZE;
|
||||
pos1 = overhead;
|
||||
pos2 = ctx->cbuf;
|
||||
sz = 0;
|
||||
ctx->valid = 1;
|
||||
|
||||
for (blk = 0; blk < blknum; blk++) {
|
||||
len = ntohl(blkarr[blk]);
|
||||
if (len <= RAB_POLYNOMIAL_MAX_BLOCK_SIZE) {
|
||||
ctx->blocks[blk].length = len;
|
||||
ctx->blocks[blk].offset = pos1;
|
||||
pos1 += len;
|
||||
} else {
|
||||
ctx->blocks[blk].length = 0;
|
||||
ctx->blocks[blk].index = len - RAB_POLYNOMIAL_MAX_BLOCK_SIZE - 1;
|
||||
}
|
||||
}
|
||||
for (blk = 0; blk < blknum; blk++) {
|
||||
if (ctx->blocks[blk].length > 0) {
|
||||
len = ctx->blocks[blk].length;
|
||||
pos1 = ctx->blocks[blk].offset;
|
||||
} else {
|
||||
oblk = ctx->blocks[blk].index;
|
||||
len = ctx->blocks[oblk].length;
|
||||
pos1 = ctx->blocks[oblk].offset;
|
||||
}
|
||||
memcpy(pos2, buf + pos1, len);
|
||||
pos2 += len;
|
||||
sz += len;
|
||||
if (sz > orig_size) {
|
||||
ctx->valid = 0;
|
||||
break;
|
||||
}
|
||||
}
|
||||
if (ctx->valid && sz < orig_size) {
|
||||
ctx->valid = 0;
|
||||
}
|
||||
*size = orig_size;
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -56,30 +56,68 @@
|
|||
*
|
||||
*/
|
||||
|
||||
#ifndef _RABIN_POLY_H_
|
||||
#define _RABIN_POLY_H_
|
||||
|
||||
#include "utils.h"
|
||||
|
||||
//List of constants, mostly constraints and defaults for various parameters
|
||||
//to the Rabin Fingerprinting algorithm
|
||||
|
||||
#define RAB_POLYNOMIAL_CONST 2
|
||||
#define RAB_POLYNOMIAL_CONST 2
|
||||
// 1 << RAB_POLYNOMIAL_AVG_BLOCK_SHIFT = Average Rabin Chunk Size
|
||||
// So we are always looking at power of 2 chunk sizes to avoid doing a modulus
|
||||
//
|
||||
// A value of 11 below gives block size of 2048 bytes
|
||||
// A value of 12 below gives avg block size of 4096 bytes
|
||||
//
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_SHIFT 11
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_SIZE (1 << RAB_POLYNOMIAL_AVG_BLOCK_SHIFT)
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_MASK (RAB_POLYNOMIAL_AVG_BLOCK_SIZE - 1)
|
||||
#define RAB_POLYNOMIAL_WIN_SIZE 32
|
||||
#define RAB_POLYNOMIAL_MIN_WIN_SIZE 17
|
||||
#define RAB_POLYNOMIAL_MAX_WIN_SIZE 63
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_SHIFT 12
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_SIZE (1 << RAB_POLYNOMIAL_AVG_BLOCK_SHIFT)
|
||||
#define RAB_POLYNOMIAL_AVG_BLOCK_MASK (RAB_POLYNOMIAL_AVG_BLOCK_SIZE - 1)
|
||||
#define RAB_POLYNOMIAL_MIN_BLOCK_SIZE (4096)
|
||||
#define RAB_POLYNOMIAL_MAX_BLOCK_SIZE (128 * 1024)
|
||||
#define RAB_POLYNOMIAL_WIN_SIZE 32
|
||||
#define RAB_POLYNOMIAL_MIN_WIN_SIZE 17
|
||||
#define RAB_POLYNOMIAL_MAX_WIN_SIZE 63
|
||||
|
||||
typedef struct {
|
||||
ssize_t offset;
|
||||
uint64_t checksum;
|
||||
unsigned int index;
|
||||
unsigned int length;
|
||||
} rabin_blockentry_t;
|
||||
|
||||
// An entry in the Rabin block array in the chunk.
|
||||
// It is either a length value <= RAB_POLYNOMIAL_MAX_BLOCK_SIZE or
|
||||
// if value > RAB_POLYNOMIAL_MAX_BLOCK_SIZE then
|
||||
// value - RAB_POLYNOMIAL_MAX_BLOCK_SIZE is index of block with which
|
||||
// this block is a duplicate.
|
||||
// Offset can be dynamically calculated.
|
||||
//
|
||||
#define RABIN_ENTRY_SIZE (sizeof (unsigned int))
|
||||
|
||||
// Header for a chunk deduped using Rabin
|
||||
// Number of rabin blocks, size of original chunk
|
||||
//
|
||||
#define RABIN_HDR_SIZE (sizeof (unsigned int) + sizeof (ssize_t))
|
||||
|
||||
typedef struct {
|
||||
unsigned char *current_window_data;
|
||||
rabin_blockentry_t *blocks;
|
||||
unsigned char *cbuf;
|
||||
unsigned char *buf;
|
||||
int window_pos;
|
||||
uint64_t cur_roll_checksum;
|
||||
uint64_t cur_checksum;
|
||||
uint64_t block_checksum;
|
||||
int dedup;
|
||||
int valid;
|
||||
} rabin_context_t;
|
||||
|
||||
extern rabin_context_t *create_rabin_context();
|
||||
extern rabin_context_t *create_rabin_context(uint64_t chunksize);
|
||||
extern void destroy_rabin_context(rabin_context_t *ctx);
|
||||
extern ssize_t scan_rabin_chunks(rabin_context_t *ctx, void *buf,
|
||||
ssize_t size, ssize_t offset);
|
||||
extern void rabin_dedup(rabin_context_t *ctx, unsigned char *buf,
|
||||
ssize_t *size, ssize_t offset);
|
||||
extern void rabin_inverse_dedup(rabin_context_t *ctx, uchar_t *buf, ssize_t *size);
|
||||
extern void reset_rabin_context(rabin_context_t *ctx);
|
||||
|
||||
#endif /* _RABIN_POLY_H_ */
|
||||
24
utils.c
24
utils.c
|
|
@ -194,30 +194,6 @@ Read(int fd, void *buf, size_t count)
|
|||
return (count - rem);
|
||||
}
|
||||
|
||||
ssize_t
|
||||
Read2(int fd, void *buf, size_t count, ssize_t *rabin_count, void *ctx)
|
||||
{
|
||||
char *buf2;
|
||||
ssize_t rcount;
|
||||
rabin_context_t *rctx = (rabin_context_t *)ctx;
|
||||
|
||||
if (!ctx) return (Read(fd, buf, count));
|
||||
buf2 = buf;
|
||||
if (*rabin_count) {
|
||||
buf2 = (char *)buf + *rabin_count;
|
||||
count -= *rabin_count;
|
||||
}
|
||||
rcount = Read(fd, buf2, count);
|
||||
if (rcount > 0) {
|
||||
rcount += *rabin_count;
|
||||
*rabin_count = scan_rabin_chunks(rctx, buf, rcount, *rabin_count);
|
||||
} else {
|
||||
if (rcount == 0) rcount = *rabin_count;
|
||||
*rabin_count = 0;
|
||||
}
|
||||
return (rcount);
|
||||
}
|
||||
|
||||
ssize_t
|
||||
Write(int fd, const void *buf, size_t count)
|
||||
{
|
||||
|
|
|
|||
2
utils.h
2
utils.h
|
|
@ -98,7 +98,7 @@ extern int parse_numeric(ssize_t *val, const char *str);
|
|||
extern char *bytes_to_size(uint64_t bytes);
|
||||
extern ssize_t Read(int fd, void *buf, size_t count);
|
||||
extern ssize_t Write(int fd, const void *buf, size_t count);
|
||||
extern ssize_t Read2(int fd, void *buf, size_t count,
|
||||
extern ssize_t Dedup_Read(int fd, uchar_t **buf, size_t count,
|
||||
ssize_t *rabin_count, void *ctx);
|
||||
|
||||
/*
|
||||
|
|
|
|||
Loading…
Reference in a new issue