/* * This file is a part of Pcompress, a chunked parallel multi- * algorithm lossless compression and decompression program. * * Copyright (C) 2012-2013 Moinak Ghosh. All rights reserved. * Use is subject to license terms. * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. * If not, see . * * moinakg@belenix.org, http://moinakg.wordpress.com/ */ #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include "index.h" /* * Hashtable structures for in-memory index. */ typedef struct { hash_entry_t **tab; } htab_t; typedef struct { htab_t *list; uint64_t memlimit; uint64_t memused; int hash_entry_size, intervals, hash_slots; } index_t; archive_config_t * init_global_db(char *configfile) { archive_config_t *cfg; int rv; cfg = calloc(1, sizeof (archive_config_t)); if (!cfg) { fprintf(stderr, "Memory allocation failure\n"); return (NULL); } rv = read_config(configfile, cfg); if (rv != 0) return (NULL); return (cfg); } void static cleanup_indx(index_t *indx) { int i, j; if (indx) { if (indx->list) { for (i = 0; i < indx->intervals; i++) { if (indx->list[i].tab) { for (j=0; jhash_slots; j++) { hash_entry_t *he, *nxt; he = indx->list[i].tab[j]; while (he) { nxt = he->next; free(he); he = nxt; } } free(indx->list[i].tab); } } free(indx->list); } free(indx); } } #define MEM_PER_UNIT(ent_sz) ( (ent_sz + sizeof (hash_entry_t *) + \ (sizeof (hash_entry_t *)) / 2) + sizeof (hash_entry_t **) ) #define MEM_REQD(hslots, ent_sz) (hslots * MEM_PER_UNIT(ent_sz)) #define SLOTS_FOR_MEM(memlimit, ent_sz) (memlimit / MEM_PER_UNIT(ent_sz) - 5) int setup_db_config_s(archive_config_t *cfg, uint32_t chunksize, uint64_t *user_chunk_sz, int *pct_interval, const char *algo, cksum_t ck, cksum_t ck_sim, size_t file_sz, uint32_t *hash_slots, int *hash_entry_size, uint64_t *memreqd, size_t memlimit, char *tmppath) { int rv, set_user; /* * file_sz = 0 and pct_interval = 0 means we are in pipe mode and want a simple * index. Set pct_interval to 100 to indicate that we need to use all of memlimit * for the simple index - This is UNUSED at present. * * If file_sz != 0 but pct_interval = 0 then we need to create a simple index * sized for the given file. If the available memory is not sufficient for a full * index and required index size is 3x of availble memory then switch to a * segmented index. * * If file_sz != 0 and pct_interval != 0 then we explicitly want to create a segmented * index. This is auto-selected to support the previous behavior. * * If file_sz = 0 and pct_interval != 0 then we are in pipe mode and want a segmented * index. This is auto-selected if Global Dedupe is used in pipe mode. */ if (*pct_interval != 0) { set_user = 1; } else { set_user = 0; } if (file_sz == 0 && *pct_interval == 0) *pct_interval = 100; set_cfg: rv = set_config_s(cfg, algo, ck, ck_sim, chunksize, file_sz, *user_chunk_sz, *pct_interval); if (cfg->dedupe_mode == MODE_SIMPLE) { if (*pct_interval != 100) *pct_interval = 0; cfg->pct_interval = 0; } /* * Adjust user_chunk_sz if indicated. */ if (set_user) { if (*user_chunk_sz < cfg->segment_sz_bytes) { *user_chunk_sz = cfg->segment_sz_bytes + (cfg->segment_sz_bytes >> 1); } else { *user_chunk_sz = (*user_chunk_sz / cfg->segment_sz_bytes) * cfg->segment_sz_bytes; } } // Compute total hashtable entries first *hash_entry_size = sizeof (hash_entry_t) + cfg->chunk_cksum_sz - 1; if (*pct_interval == 0) { cfg->sub_intervals = 1; *hash_slots = file_sz / cfg->chunk_sz_bytes + 1; } else if (*pct_interval == 100) { cfg->sub_intervals = 1; *hash_slots = SLOTS_FOR_MEM(memlimit, *hash_entry_size); *pct_interval = 0; } else { *hash_entry_size = sizeof (hash_entry_t) + cfg->similarity_cksum_sz - 1; cfg->intervals = 100 / *pct_interval; cfg->sub_intervals = cfg->intervals; /* * If file size is zero we use entire memlimit for hash slots. */ if (file_sz == 0) { *hash_slots = SLOTS_FOR_MEM(memlimit, *hash_entry_size); } else { *hash_slots = file_sz / cfg->segment_sz_bytes; *hash_slots *= cfg->sub_intervals; } } /* * Compute memory required to hold all hash entries assuming worst case 50% * occupancy. */ *memreqd = MEM_REQD(*hash_slots, *hash_entry_size); /* * If memory required is more than twice the indicated memory limit then * we switch to Segmented Similarity based dedupe. */ if (*memreqd > (memlimit * 2) && cfg->dedupe_mode == MODE_SIMPLE && *pct_interval == 0 && tmppath != NULL) { *pct_interval = DEFAULT_PCT_INTERVAL; set_user = 1; goto set_cfg; } return (rv); } archive_config_t * init_global_db_s(char *path, char *tmppath, uint32_t chunksize, uint64_t user_chunk_sz, int pct_interval, const char *algo, cksum_t ck, cksum_t ck_sim, size_t file_sz, size_t memlimit, int nthreads) { archive_config_t *cfg; int rv; uint32_t hash_slots, intervals, i; uint64_t memreqd; int hash_entry_size; index_t *indx; if (path != NULL) { fprintf(stderr, "Disk based index not yet implemented.\n"); return (NULL); } cfg = calloc(1, sizeof (archive_config_t)); rv = setup_db_config_s(cfg, chunksize, &user_chunk_sz, &pct_interval, algo, ck, ck_sim, file_sz, &hash_slots, &hash_entry_size, &memreqd, memlimit, tmppath); /* * Reduce hash_slots to remain within memlimit */ while (memreqd > memlimit) { hash_slots--; memreqd = hash_slots * MEM_PER_UNIT(hash_entry_size); } /* * Now initialize the hashtable[s] to setup the index. */ indx = calloc(1, sizeof (index_t)); if (!indx) { free(cfg); return (NULL); } cfg->nthreads = nthreads; if (cfg->dedupe_mode == MODE_SIMILARITY) intervals = 1; else intervals = cfg->sub_intervals; indx->memlimit = memlimit - (hash_entry_size << 2); indx->list = (htab_t *)calloc(intervals, sizeof (htab_t)); indx->hash_entry_size = hash_entry_size; indx->intervals = intervals; indx->hash_slots = hash_slots / intervals; for (i = 0; i < intervals; i++) { indx->list[i].tab = (hash_entry_t **)calloc(indx->hash_slots, sizeof (hash_entry_t *)); if (!(indx->list[i].tab)) { cleanup_indx(indx); free(cfg); return (NULL); } indx->memused += ((indx->hash_slots) * (sizeof (hash_entry_t *))); } /* * If Segmented Deduplication is required intervals will be set and a temporary * file is created to hold rabin block hash lists for each segment. */ if (pct_interval > 0) { int errored; DEBUG_STAT_EN(printf("Using Segmented Global Deduplication.\n")); strcpy(cfg->rootdir, tmppath); strcat(cfg->rootdir, "/.segXXXXXX"); cfg->seg_fd_w = mkstemp(cfg->rootdir); cfg->seg_fd_r = (struct seg_map_fd *)malloc(sizeof (struct seg_map_fd) * nthreads); if (cfg->seg_fd_w == -1 || cfg->seg_fd_r == NULL) { cleanup_indx(indx); if (cfg->seg_fd_r) free(cfg->seg_fd_r); free(cfg); return (NULL); } errored = 0; for (i = 0; i < nthreads; i++) { cfg->seg_fd_r[i].fd = open(cfg->rootdir, O_RDONLY); if (cfg->seg_fd_r[i].fd == -1) { perror(" "); errored = 1; break; } cfg->seg_fd_r[i].mapping = NULL; } /* * Remove tempfile entry from the filesystem metadata so that file gets * automatically removed once process exits. */ unlink(cfg->rootdir); if (errored) { cleanup_indx(indx); if (cfg->seg_fd_r) free(cfg->seg_fd_r); free(cfg); return (NULL); } } cfg->segcache_pos = 0; cfg->dbdata = indx; return (cfg); } /* * Functions to handle segment metadata cache for segmented similarity based deduplication. * These functions are not thread-safe by design. The caller must ensure thread safety. */ /* * Add new segment block list array into the metadata cache. Once added the entry is * not removed till the program exits. */ #define SEGCACHE_HDR_SZ 12 int db_segcache_write(archive_config_t *cfg, int tid, uchar_t *buf, uint32_t len, uint32_t blknum, uint64_t file_offset) { int64_t w; uchar_t hdr[SEGCACHE_HDR_SZ]; *((uint32_t *)(hdr)) = blknum; *((uint64_t *)(hdr + 4)) = file_offset; w = Write(cfg->seg_fd_w, hdr, sizeof (hdr)); if (w < sizeof (hdr)) { /* * On error restore file pointer to previous position so that * all subsequent offsets will be properly computed. */ lseek(cfg->seg_fd_w, cfg->segcache_pos, SEEK_SET); return (-1); } cfg->segcache_pos += w; w = Write(cfg->seg_fd_w, buf, len); if (w < len) { /* * On error restore file pointer to previous position so that * all subsequent offsets will be properly computed. */ lseek(cfg->seg_fd_w, cfg->segcache_pos, SEEK_SET); return (-1); } cfg->segcache_pos += w; return (0); } /* * Get the current file pointer position of the metadata file. This indicates the * position where the next entry will be added. */ uint64_t db_segcache_pos(archive_config_t *cfg, int tid) { return (cfg->segcache_pos); } /* * Mmap the requested segment metadata array. */ int db_segcache_map(archive_config_t *cfg, int tid, uint32_t *blknum, uint64_t *offset, uchar_t **blocks) { uchar_t *mapbuf, *hdr; int fd, dummy; uint32_t len, adj; uint64_t pos; /* * If same mapping is re-attempted just return the pointer into the * existing mapping. */ adj = *offset % cfg->pagesize; if (*offset == cfg->seg_fd_r[tid].cache_offset && cfg->seg_fd_r[tid].mapping) { hdr = (uchar_t *)(cfg->seg_fd_r[tid].mapping) + adj; *blknum = *((uint32_t *)(hdr)); *offset = *((uint64_t *)(hdr + 4)); *blocks = hdr + SEGCACHE_HDR_SZ; return (0); } /* * Ensure previous mapping is removed. */ db_segcache_unmap(cfg, tid); fd = cfg->seg_fd_r[tid].fd; if (lseek(fd, *offset, SEEK_SET) != *offset) { perror(" "); return (-1); } /* * Mmap hdr and blocks. We assume max # of rabin block entries and mmap (unless remaining * file length is less). The header contains actual number of block entries so mmap-ing * extra has no consequence other than address space usage. */ len = cfg->segment_sz * sizeof (global_blockentry_t) + SEGCACHE_HDR_SZ; pos = cfg->segcache_pos; if (pos - *offset < len) len = pos - *offset; mapbuf = mmap(NULL, len + adj, PROT_READ, MAP_SHARED, fd, *offset - adj); if (mapbuf == MAP_FAILED) { perror(" "); return (-1); } cfg->seg_fd_r[tid].cache_offset = *offset; hdr = mapbuf + adj; *blknum = *((uint32_t *)(hdr)); *offset = *((uint64_t *)(hdr + 4)); *blocks = hdr + SEGCACHE_HDR_SZ; dummy = *(hdr + SEGCACHE_HDR_SZ); cfg->seg_fd_r[tid].mapping = mapbuf; cfg->seg_fd_r[tid].len = len + adj; return (0); } /* * Remove the metadata mapping. */ int db_segcache_unmap(archive_config_t *cfg, int tid) { if (cfg->seg_fd_r[tid].mapping) { munmap(cfg->seg_fd_r[tid].mapping, cfg->seg_fd_r[tid].len); cfg->seg_fd_r[tid].mapping = NULL; } return (0); } /* * Compare hashes. Hash size must be multiple of 8 bytes. */ static inline int mycmp(uchar_t *a, uchar_t *b, int sz) { size_t val1, val2; uchar_t *v1 = a; uchar_t *v2 = b; int len; len = 0; do { val1 = *((size_t *)v1); val2 = *((size_t *)v2); if (val1 != val2) { return (1); } v1 += sizeof (size_t); v2 += sizeof (size_t); len += sizeof (size_t); } while (len < sz); return (0); } /* * Lookup and insert item if indicated. Not thread-safe by design. Caller needs to * ensure thread-safety. */ hash_entry_t * db_lookup_insert_s(archive_config_t *cfg, uchar_t *sim_cksum, int interval, uint64_t item_offset, uint32_t item_size, int do_insert) { uint32_t htab_entry; index_t *indx = (index_t *)(cfg->dbdata); hash_entry_t **htab, *ent, **pent; assert((cfg->similarity_cksum_sz & (sizeof (size_t) - 1)) == 0); /* * If doing similarity based dedupe, keys will be 64-bit and are portions of * cryptographic hashes. Since those are already a product of strong hashing * there is no need to re-hash the keys here. */ if (cfg->similarity_cksum_sz == 8) { htab_entry = *((uint32_t *)sim_cksum); } else { htab_entry = XXH32(sim_cksum, cfg->similarity_cksum_sz, 0); } htab_entry ^= (htab_entry / cfg->similarity_cksum_sz); htab_entry = htab_entry % indx->hash_slots; htab = indx->list[interval].tab; pent = &(htab[htab_entry]); ent = htab[htab_entry]; if (cfg->pct_interval == 0) { // Global dedupe with simple index. assert(cfg->similarity_cksum_sz == cfg->chunk_cksum_sz); while (ent) { if (mycmp(sim_cksum, ent->cksum, cfg->similarity_cksum_sz) == 0 && ent->item_size == item_size) { return (ent); } pent = &(ent->next); ent = ent->next; } // The following two cases are for Segmented Dedupe approximate matching } else if (cfg->similarity_cksum_sz == 8) {// Fast path for 64-bit keys while (ent) { if (*((uint64_t *)sim_cksum) == *((uint64_t *)ent->cksum)) { return (ent); } pent = &(ent->next); ent = ent->next; } } else { while (ent) { if (mycmp(sim_cksum, ent->cksum, cfg->similarity_cksum_sz) == 0) { return (ent); } pent = &(ent->next); ent = ent->next; } } if (do_insert) { if (indx->memused + indx->hash_entry_size >= indx->memlimit && htab[htab_entry] != NULL) { /* * If the index is close to full capacity, steal the oldest hash bucket * in this slot to hold the new data. */ ent = htab[htab_entry]; htab[htab_entry] = htab[htab_entry]->next; } else { ent = (hash_entry_t *)malloc(indx->hash_entry_size); indx->memused += indx->hash_entry_size; } ent->item_offset = item_offset; ent->item_size = item_size; ent->next = 0; memcpy(ent->cksum, sim_cksum, cfg->similarity_cksum_sz); *pent = ent; } return (NULL); } void destroy_global_db_s(archive_config_t *cfg) { int i; index_t *indx = (index_t *)(cfg->dbdata); cleanup_indx(indx); if (cfg->pct_interval > 0) { for (i = 0; i < cfg->nthreads; i++) { close(cfg->seg_fd_r[i].fd); } free(cfg->seg_fd_r); close(cfg->seg_fd_w); } }