/* * This file is a part of Pcompress, a chunked parallel multi- * algorithm lossless compression and decompression program. * * Copyright (C) 2012-2013 Moinak Ghosh. All rights reserved. * Use is subject to license terms. * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public * License as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. * If not, see . * * moinakg@belenix.org, http://moinakg.wordpress.com/ */ #include #include #include #include #include #include #include #include #include #include #include #include #include #include "db.h" #define ONE_PB (1125899906842624ULL) #define ONE_TB (1099511627776ULL) #define FOUR_MB (4194304ULL) #define EIGHT_MB (8388608ULL) /* * Hashtable structures for in-memory index. */ typedef struct _hash_entry { uint64_t seg_offset; struct _hash_entry *next; uchar_t cksum[1]; } hash_entry_t; typedef struct { hash_entry_t **tab; } htab_t; typedef struct { htab_t *list; pthread_mutex_t *mlist; uint64_t memlimit; uint64_t memused; int hash_entry_size, intervals, hash_slots; } index_t; archive_config_t * init_global_db(char *configfile) { archive_config_t *cfg; int rv; cfg = calloc(1, sizeof (archive_config_t)); if (!cfg) { fprintf(stderr, "Memory allocation failure\n"); return (NULL); } rv = read_config(configfile, cfg); if (rv != 0) return (NULL); return (cfg); } void static cleanup_indx(index_t *indx) { int i; if (indx) { if (indx->list) { for (i = 0; i < indx->intervals; i++) { if (indx->list[i].tab) free(indx->list[i].tab); } free(indx->list); } if (indx->mlist) free(indx->mlist); free(indx); } } archive_config_t * init_global_db_s(char *path, char *tmppath, uint32_t chunksize, int pct_interval, compress_algo_t algo, cksum_t ck, cksum_t ck_sim, size_t file_sz, size_t memlimit, int nthreads) { archive_config_t *cfg; int rv; float diff; cfg = calloc(1, sizeof (archive_config_t)); rv = set_config_s(cfg, algo, ck, ck_sim, chunksize, file_sz, pct_interval); if (path != NULL) { printf("Disk based index not yet implemented.\n"); free(cfg); return (NULL); } else { uint32_t hash_slots, intervals, i; uint64_t memreqd; int hash_entry_size; index_t *indx; // Compute total hashtable entries first intervals = 100 / pct_interval - 1; hash_slots = file_sz / cfg->segment_sz_bytes + 1; hash_slots *= intervals; hash_entry_size = sizeof (hash_entry_t) + cfg->similarity_cksum_sz - 1; // Compute memory required to hold all hash entries assuming worst case 50% // occupancy. memreqd = hash_slots * (hash_entry_size + sizeof (hash_entry_t *) + (sizeof (hash_entry_t *)) / 2); memreqd += hash_slots * sizeof (hash_entry_t **); diff = (float)pct_interval / 100.0; // Reduce hash_slots to remain within memlimit while (memreqd > memlimit) { hash_slots -= (hash_slots * diff); memreqd = hash_slots * (hash_entry_size + sizeof (hash_entry_t *) + (sizeof (hash_entry_t *)) / 2); memreqd += hash_slots * sizeof (hash_entry_t **); } // Now create as many hash tables as there are similarity match intervals // each having hash_slots / intervals slots. indx = calloc(1, sizeof (index_t)); if (!indx) { free(cfg); return (NULL); } indx->memlimit = memlimit; indx->list = (htab_t *)calloc(intervals, sizeof (htab_t)); indx->mlist = (pthread_mutex_t *)malloc(intervals * sizeof (pthread_mutex_t)); indx->hash_entry_size = hash_entry_size; indx->intervals = intervals; indx->hash_slots = hash_slots / intervals; for (i = 0; i < intervals; i++) { indx->list[i].tab = (hash_entry_t **)calloc(hash_slots / intervals, sizeof (hash_entry_t *)); if (!(indx->list[i].tab)) { cleanup_indx(indx); free(cfg); return (NULL); } indx->memused += ((hash_slots / intervals) * (sizeof (hash_entry_t *))); pthread_mutex_init(&(indx->mlist[i]), NULL); } strcpy(cfg->rootdir, tmppath); strcat(cfg->rootdir, "/.segXXXXXX"); cfg->seg_fd_w = mkstemp(cfg->rootdir); cfg->seg_fd_r = (int *)malloc(sizeof (int) * nthreads); if (cfg->seg_fd_w == -1 || cfg->seg_fd_r == NULL) { cleanup_indx(indx); if (cfg->seg_fd_r) free(cfg->seg_fd_r); free(cfg); return (NULL); } for (i = 0; i < nthreads; i++) { cfg->seg_fd_r[i] = open(cfg->rootdir, O_RDONLY); } cfg->dbdata = indx; } return (cfg); } static inline int mycmp(uchar_t *a, uchar_t *b, int sz) { size_t val1, val2; uchar_t *v1 = a; uchar_t *v2 = b; int len; len = 0; do { val1 = *((size_t *)v1); val2 = *((size_t *)v1); if (val1 != val2) { return (1); } v1 += sizeof (size_t); v2 += sizeof (size_t); len += sizeof (size_t); } while (len < sz); return (0); } uint64_t db_lookup_insert_s(archive_config_t *cfg, uchar_t *sim_cksum, int interval, uint64_t seg_offset, int do_insert) { uint32_t htab_entry; index_t *indx = (index_t *)(cfg->dbdata); hash_entry_t **htab, *ent, **pent; assert(cfg->similarity_cksum_sz && (sizeof (size_t) - 1) == 0); htab_entry = XXH32(sim_cksum, cfg->similarity_cksum_sz, 0); htab_entry ^= (htab_entry / cfg->similarity_cksum_sz); htab_entry = htab_entry % indx->hash_slots; htab = indx->list[interval].tab; pent = &(htab[htab_entry]); pthread_mutex_lock(&(indx->mlist[interval])); ent = htab[htab_entry]; while (ent) { if (mycmp(sim_cksum, ent->cksum, cfg->similarity_cksum_sz) == 0) { uint64_t off; off = ent->seg_offset; pthread_mutex_unlock(&(indx->mlist[interval])); return (off+1); } pent = &(ent->next); ent = ent->next; } if (do_insert) { if (indx->memused + indx->hash_entry_size >= indx->memlimit - (indx->hash_entry_size << 2)) { ent = htab[htab_entry]; pent = &(htab[htab_entry]); htab[htab_entry] = htab[htab_entry]->next; } else { ent = (hash_entry_t *)malloc(indx->hash_entry_size); } ent->seg_offset = seg_offset; ent->next = 0; memcpy(ent->cksum, sim_cksum, cfg->similarity_cksum_sz); *pent = ent; } pthread_mutex_unlock(&(indx->mlist[interval])); return (0); }