stasis-aries-wal/stasis/util/concurrentSkipList.h

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merge in changes from svn[r1572..r1601] ------------------------------------------------------------------------ r1601 | sears.russell@gmail.com | 2012-03-20 18:43:00 -0400 (Tue, 20 Mar 2012) | 1 line commit bLSM bloom filter to stasis/util, which is where it really belongs ------------------------------------------------------------------------ r1600 | sears.russell@gmail.com | 2012-03-04 01:58:38 -0500 (Sun, 04 Mar 2012) | 1 line fix memory leak in skiplist unit test (now it is valgrind clean) ------------------------------------------------------------------------ r1599 | sears.russell@gmail.com | 2012-03-04 01:58:05 -0500 (Sun, 04 Mar 2012) | 1 line fix typo in finalize type ------------------------------------------------------------------------ r1598 | sears.russell@gmail.com | 2012-03-04 00:59:59 -0500 (Sun, 04 Mar 2012) | 1 line add comparator and finalizer parameters to skiplist constructor ------------------------------------------------------------------------ r1597 | sears.russell@gmail.com | 2012-03-03 18:23:16 -0500 (Sat, 03 Mar 2012) | 1 line bugfixes for skiplist ------------------------------------------------------------------------ r1596 | sears.russell@gmail.com | 2012-03-02 15:05:07 -0500 (Fri, 02 Mar 2012) | 1 line updated concurrentSkipList. Seeing strange crashes ------------------------------------------------------------------------ r1595 | sears.russell@gmail.com | 2012-03-01 16:51:59 -0500 (Thu, 01 Mar 2012) | 1 line add progress reports ------------------------------------------------------------------------ r1594 | sears.russell@gmail.com | 2012-02-28 13:17:05 -0500 (Tue, 28 Feb 2012) | 1 line experimental support for automatic logfile preallocation ------------------------------------------------------------------------ r1593 | sears.russell@gmail.com | 2012-02-28 12:10:01 -0500 (Tue, 28 Feb 2012) | 1 line add histogram reporting to rawIOPS benchmark ------------------------------------------------------------------------ r1592 | sears.russell@gmail.com | 2012-02-24 16:31:36 -0500 (Fri, 24 Feb 2012) | 1 line userspace raid 0 implementation ------------------------------------------------------------------------ r1591 | sears.russell@gmail.com | 2012-02-12 01:47:25 -0500 (Sun, 12 Feb 2012) | 1 line add skiplist unit test, fix compile warnings ------------------------------------------------------------------------ r1590 | sears.russell@gmail.com | 2012-02-12 00:52:52 -0500 (Sun, 12 Feb 2012) | 1 line fix compile error ------------------------------------------------------------------------ r1589 | sears.russell@gmail.com | 2012-02-12 00:50:21 -0500 (Sun, 12 Feb 2012) | 1 line fix some bugs in hazard.h surrounding thread list management and overruns of R under high contention ------------------------------------------------------------------------ r1588 | sears.russell@gmail.com | 2012-02-11 14:23:10 -0500 (Sat, 11 Feb 2012) | 1 line add hazard pointer for get_lock. It was implicitly blowing away the hazard pointer protecting y in the caller ------------------------------------------------------------------------ r1587 | sears.russell@gmail.com | 2012-02-10 18:51:25 -0500 (Fri, 10 Feb 2012) | 1 line fix null pointer bug ------------------------------------------------------------------------ r1586 | sears.russell@gmail.com | 2012-02-10 18:03:39 -0500 (Fri, 10 Feb 2012) | 1 line add simple refcounting scheme to concurrentSkipList. This solves the problem where a deleted node points to another deleted node, and we only have a hazard pointer for the first node. ------------------------------------------------------------------------ r1585 | sears.russell@gmail.com | 2012-02-10 14:19:14 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update using the smallest free slot first. The old method left a race condition, since hazard_scan stops at the first null pointer. ------------------------------------------------------------------------ r1584 | sears.russell@gmail.com | 2012-02-10 02:45:30 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update array ------------------------------------------------------------------------ r1583 | sears.russell@gmail.com | 2012-02-10 00:04:50 -0500 (Fri, 10 Feb 2012) | 1 line skiplist update: concurrent, but broken ------------------------------------------------------------------------ r1582 | sears.russell@gmail.com | 2012-02-09 17:44:27 -0500 (Thu, 09 Feb 2012) | 1 line skip list implementation. Not concurrent yet. ------------------------------------------------------------------------ r1581 | sears.russell@gmail.com | 2012-02-08 13:33:29 -0500 (Wed, 08 Feb 2012) | 1 line Commit of a bunch of new, unused code: KISS random number generator, Hazard Pointers, SUX latches (untested) and bit twiddling for concurrent b-tree ------------------------------------------------------------------------ r1580 | sears.russell@gmail.com | 2012-01-17 19:17:37 -0500 (Tue, 17 Jan 2012) | 1 line fix typo ------------------------------------------------------------------------ r1579 | sears.russell@gmail.com | 2012-01-11 18:33:31 -0500 (Wed, 11 Jan 2012) | 1 line static build fixes for linux. hopefully these do not break macos... ------------------------------------------------------------------------ r1578 | sears.russell@gmail.com | 2012-01-09 19:13:34 -0500 (Mon, 09 Jan 2012) | 1 line fix cmake under linux ------------------------------------------------------------------------ r1577 | sears.russell@gmail.com | 2012-01-09 18:37:15 -0500 (Mon, 09 Jan 2012) | 1 line fix linux static binary compilation bugs ------------------------------------------------------------------------ r1576 | sears.russell | 2012-01-09 18:00:08 -0500 (Mon, 09 Jan 2012) | 1 line port to macos x ------------------------------------------------------------------------ r1575 | sears.russell | 2012-01-09 17:39:43 -0500 (Mon, 09 Jan 2012) | 1 line add missing _ from sync call name ------------------------------------------------------------------------ r1574 | sears.russell@gmail.com | 2012-01-09 14:26:31 -0500 (Mon, 09 Jan 2012) | 1 line add -rt flag to static builds ------------------------------------------------------------------------ r1573 | sears.russell@gmail.com | 2011-12-20 23:38:29 -0500 (Tue, 20 Dec 2011) | 1 line Simple makefile geared toward building libstasis.so and libstasis.a (and nothing else) ------------------------------------------------------------------------ r1572 | sears.russell@gmail.com | 2011-12-20 22:37:54 -0500 (Tue, 20 Dec 2011) | 1 line add some missing #include<config.h> lines
2012-04-21 16:52:31 +00:00
/*
* concurrentSkipList.h
*
* Created on: Feb 8, 2012
* Author: sears
*/
#ifndef CONCURRENTSKIPLIST_H_
#define CONCURRENTSKIPLIST_H_
#include <stdio.h>
#include <stasis/common.h>
#include <stasis/util/random.h>
BEGIN_C_DECLS
//#define stasis_util_skiplist_assert(x) assert(x)
#define stasis_util_skiplist_assert(x)
#define STASIS_SKIPLIST_HP_COUNT 3
#include <stasis/util/hazard.h>
typedef struct stasis_skiplist_node_t {
hazard_ptr key;
pthread_mutex_t level_mut;
char level;
int16_t refcount;
} stasis_skiplist_node_t;
typedef struct {
hazard_ptr header;
int levelCap;
int levelHint;
pthread_mutex_t levelHint_mut;
pthread_key_t k;
hazard_t * h;
hazard_t * ret_hazard;
int (*cmp)(const void *a, const void *b);
int (*finalize)(void *node, void *nul);
} stasis_skiplist_t;
static inline stasis_skiplist_node_t** stasis_util_skiplist_get_forward_raw(
stasis_skiplist_node_t * x, int n) {
return (stasis_skiplist_node_t**)(((intptr_t)(x + 1))
+(n-1)*(sizeof(stasis_skiplist_node_t*)+sizeof(pthread_mutex_t)));
}
static inline hazard_ptr* stasis_util_skiplist_get_forward(
stasis_skiplist_node_t * x, int n){
return (hazard_ptr*)stasis_util_skiplist_get_forward_raw(x,n);
}
static inline pthread_mutex_t * stasis_util_skiplist_get_forward_mutex(
stasis_skiplist_node_t * x, int n) {
return (pthread_mutex_t*)(stasis_util_skiplist_get_forward(x,n)+1);
}
int stasis_util_skiplist_node_finalize(void * pp, void * conf) {
stasis_skiplist_node_t * p = pp;
stasis_skiplist_t * list = conf;
if(p->refcount == 0) {
void * oldKey = (void*)p->key; // do this early to find races.
for(int i = 1; i <= p->level; i++) {
stasis_skiplist_node_t * n = *stasis_util_skiplist_get_forward_raw(p, i);
int oldval = __sync_sub_and_fetch(&n->refcount, 1);
(void)oldval;
stasis_util_skiplist_assert(oldval >= 0);
}
hazard_free(list->ret_hazard, oldKey);
pthread_mutex_destroy(&p->level_mut);
stasis_util_skiplist_assert(oldKey == (void*)p->key);
stasis_util_skiplist_assert(p->refcount == 0);
free(p);
return 1;
} else {
return 0;
}
}
int stasis_util_skiplist_default_key_finalize(void * p, void * ignored) {
free(p);
return 1;
}
static inline int stasis_util_skiplist_random_level(pthread_key_t k) {
kiss_table_t * kiss = pthread_getspecific(k);
if(kiss == 0) {
kiss = stasis_malloc(1, kiss_table_t);
merge in changes from svn[r1572..r1601] ------------------------------------------------------------------------ r1601 | sears.russell@gmail.com | 2012-03-20 18:43:00 -0400 (Tue, 20 Mar 2012) | 1 line commit bLSM bloom filter to stasis/util, which is where it really belongs ------------------------------------------------------------------------ r1600 | sears.russell@gmail.com | 2012-03-04 01:58:38 -0500 (Sun, 04 Mar 2012) | 1 line fix memory leak in skiplist unit test (now it is valgrind clean) ------------------------------------------------------------------------ r1599 | sears.russell@gmail.com | 2012-03-04 01:58:05 -0500 (Sun, 04 Mar 2012) | 1 line fix typo in finalize type ------------------------------------------------------------------------ r1598 | sears.russell@gmail.com | 2012-03-04 00:59:59 -0500 (Sun, 04 Mar 2012) | 1 line add comparator and finalizer parameters to skiplist constructor ------------------------------------------------------------------------ r1597 | sears.russell@gmail.com | 2012-03-03 18:23:16 -0500 (Sat, 03 Mar 2012) | 1 line bugfixes for skiplist ------------------------------------------------------------------------ r1596 | sears.russell@gmail.com | 2012-03-02 15:05:07 -0500 (Fri, 02 Mar 2012) | 1 line updated concurrentSkipList. Seeing strange crashes ------------------------------------------------------------------------ r1595 | sears.russell@gmail.com | 2012-03-01 16:51:59 -0500 (Thu, 01 Mar 2012) | 1 line add progress reports ------------------------------------------------------------------------ r1594 | sears.russell@gmail.com | 2012-02-28 13:17:05 -0500 (Tue, 28 Feb 2012) | 1 line experimental support for automatic logfile preallocation ------------------------------------------------------------------------ r1593 | sears.russell@gmail.com | 2012-02-28 12:10:01 -0500 (Tue, 28 Feb 2012) | 1 line add histogram reporting to rawIOPS benchmark ------------------------------------------------------------------------ r1592 | sears.russell@gmail.com | 2012-02-24 16:31:36 -0500 (Fri, 24 Feb 2012) | 1 line userspace raid 0 implementation ------------------------------------------------------------------------ r1591 | sears.russell@gmail.com | 2012-02-12 01:47:25 -0500 (Sun, 12 Feb 2012) | 1 line add skiplist unit test, fix compile warnings ------------------------------------------------------------------------ r1590 | sears.russell@gmail.com | 2012-02-12 00:52:52 -0500 (Sun, 12 Feb 2012) | 1 line fix compile error ------------------------------------------------------------------------ r1589 | sears.russell@gmail.com | 2012-02-12 00:50:21 -0500 (Sun, 12 Feb 2012) | 1 line fix some bugs in hazard.h surrounding thread list management and overruns of R under high contention ------------------------------------------------------------------------ r1588 | sears.russell@gmail.com | 2012-02-11 14:23:10 -0500 (Sat, 11 Feb 2012) | 1 line add hazard pointer for get_lock. It was implicitly blowing away the hazard pointer protecting y in the caller ------------------------------------------------------------------------ r1587 | sears.russell@gmail.com | 2012-02-10 18:51:25 -0500 (Fri, 10 Feb 2012) | 1 line fix null pointer bug ------------------------------------------------------------------------ r1586 | sears.russell@gmail.com | 2012-02-10 18:03:39 -0500 (Fri, 10 Feb 2012) | 1 line add simple refcounting scheme to concurrentSkipList. This solves the problem where a deleted node points to another deleted node, and we only have a hazard pointer for the first node. ------------------------------------------------------------------------ r1585 | sears.russell@gmail.com | 2012-02-10 14:19:14 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update using the smallest free slot first. The old method left a race condition, since hazard_scan stops at the first null pointer. ------------------------------------------------------------------------ r1584 | sears.russell@gmail.com | 2012-02-10 02:45:30 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update array ------------------------------------------------------------------------ r1583 | sears.russell@gmail.com | 2012-02-10 00:04:50 -0500 (Fri, 10 Feb 2012) | 1 line skiplist update: concurrent, but broken ------------------------------------------------------------------------ r1582 | sears.russell@gmail.com | 2012-02-09 17:44:27 -0500 (Thu, 09 Feb 2012) | 1 line skip list implementation. Not concurrent yet. ------------------------------------------------------------------------ r1581 | sears.russell@gmail.com | 2012-02-08 13:33:29 -0500 (Wed, 08 Feb 2012) | 1 line Commit of a bunch of new, unused code: KISS random number generator, Hazard Pointers, SUX latches (untested) and bit twiddling for concurrent b-tree ------------------------------------------------------------------------ r1580 | sears.russell@gmail.com | 2012-01-17 19:17:37 -0500 (Tue, 17 Jan 2012) | 1 line fix typo ------------------------------------------------------------------------ r1579 | sears.russell@gmail.com | 2012-01-11 18:33:31 -0500 (Wed, 11 Jan 2012) | 1 line static build fixes for linux. hopefully these do not break macos... ------------------------------------------------------------------------ r1578 | sears.russell@gmail.com | 2012-01-09 19:13:34 -0500 (Mon, 09 Jan 2012) | 1 line fix cmake under linux ------------------------------------------------------------------------ r1577 | sears.russell@gmail.com | 2012-01-09 18:37:15 -0500 (Mon, 09 Jan 2012) | 1 line fix linux static binary compilation bugs ------------------------------------------------------------------------ r1576 | sears.russell | 2012-01-09 18:00:08 -0500 (Mon, 09 Jan 2012) | 1 line port to macos x ------------------------------------------------------------------------ r1575 | sears.russell | 2012-01-09 17:39:43 -0500 (Mon, 09 Jan 2012) | 1 line add missing _ from sync call name ------------------------------------------------------------------------ r1574 | sears.russell@gmail.com | 2012-01-09 14:26:31 -0500 (Mon, 09 Jan 2012) | 1 line add -rt flag to static builds ------------------------------------------------------------------------ r1573 | sears.russell@gmail.com | 2011-12-20 23:38:29 -0500 (Tue, 20 Dec 2011) | 1 line Simple makefile geared toward building libstasis.so and libstasis.a (and nothing else) ------------------------------------------------------------------------ r1572 | sears.russell@gmail.com | 2011-12-20 22:37:54 -0500 (Tue, 20 Dec 2011) | 1 line add some missing #include<config.h> lines
2012-04-21 16:52:31 +00:00
stasis_util_random_kiss_settable(kiss,
random(), random(), random(), random(), random(), random());
pthread_setspecific(k, kiss);
}
// MWC is weaker but faster than KISS. The main drawback is that it has a
// period of 2^60. I can't imagine that mattering for our purposes.
// __builtin_ctz counts trailing zeros, so, this function hardcodes p = 0.5.
// MWC returns a 32-bit int; above 2^32 elements we start to violate the
// O(log n) bounds.
return 1+__builtin_ctz(stasis_util_random_kiss_MWC(kiss));
}
static inline hazard_ptr stasis_util_skiplist_make_node(int level, void * key) {
stasis_skiplist_node_t * x
= (stasis_skiplist_node_t*)malloc(sizeof(*x)
merge in changes from svn[r1572..r1601] ------------------------------------------------------------------------ r1601 | sears.russell@gmail.com | 2012-03-20 18:43:00 -0400 (Tue, 20 Mar 2012) | 1 line commit bLSM bloom filter to stasis/util, which is where it really belongs ------------------------------------------------------------------------ r1600 | sears.russell@gmail.com | 2012-03-04 01:58:38 -0500 (Sun, 04 Mar 2012) | 1 line fix memory leak in skiplist unit test (now it is valgrind clean) ------------------------------------------------------------------------ r1599 | sears.russell@gmail.com | 2012-03-04 01:58:05 -0500 (Sun, 04 Mar 2012) | 1 line fix typo in finalize type ------------------------------------------------------------------------ r1598 | sears.russell@gmail.com | 2012-03-04 00:59:59 -0500 (Sun, 04 Mar 2012) | 1 line add comparator and finalizer parameters to skiplist constructor ------------------------------------------------------------------------ r1597 | sears.russell@gmail.com | 2012-03-03 18:23:16 -0500 (Sat, 03 Mar 2012) | 1 line bugfixes for skiplist ------------------------------------------------------------------------ r1596 | sears.russell@gmail.com | 2012-03-02 15:05:07 -0500 (Fri, 02 Mar 2012) | 1 line updated concurrentSkipList. Seeing strange crashes ------------------------------------------------------------------------ r1595 | sears.russell@gmail.com | 2012-03-01 16:51:59 -0500 (Thu, 01 Mar 2012) | 1 line add progress reports ------------------------------------------------------------------------ r1594 | sears.russell@gmail.com | 2012-02-28 13:17:05 -0500 (Tue, 28 Feb 2012) | 1 line experimental support for automatic logfile preallocation ------------------------------------------------------------------------ r1593 | sears.russell@gmail.com | 2012-02-28 12:10:01 -0500 (Tue, 28 Feb 2012) | 1 line add histogram reporting to rawIOPS benchmark ------------------------------------------------------------------------ r1592 | sears.russell@gmail.com | 2012-02-24 16:31:36 -0500 (Fri, 24 Feb 2012) | 1 line userspace raid 0 implementation ------------------------------------------------------------------------ r1591 | sears.russell@gmail.com | 2012-02-12 01:47:25 -0500 (Sun, 12 Feb 2012) | 1 line add skiplist unit test, fix compile warnings ------------------------------------------------------------------------ r1590 | sears.russell@gmail.com | 2012-02-12 00:52:52 -0500 (Sun, 12 Feb 2012) | 1 line fix compile error ------------------------------------------------------------------------ r1589 | sears.russell@gmail.com | 2012-02-12 00:50:21 -0500 (Sun, 12 Feb 2012) | 1 line fix some bugs in hazard.h surrounding thread list management and overruns of R under high contention ------------------------------------------------------------------------ r1588 | sears.russell@gmail.com | 2012-02-11 14:23:10 -0500 (Sat, 11 Feb 2012) | 1 line add hazard pointer for get_lock. It was implicitly blowing away the hazard pointer protecting y in the caller ------------------------------------------------------------------------ r1587 | sears.russell@gmail.com | 2012-02-10 18:51:25 -0500 (Fri, 10 Feb 2012) | 1 line fix null pointer bug ------------------------------------------------------------------------ r1586 | sears.russell@gmail.com | 2012-02-10 18:03:39 -0500 (Fri, 10 Feb 2012) | 1 line add simple refcounting scheme to concurrentSkipList. This solves the problem where a deleted node points to another deleted node, and we only have a hazard pointer for the first node. ------------------------------------------------------------------------ r1585 | sears.russell@gmail.com | 2012-02-10 14:19:14 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update using the smallest free slot first. The old method left a race condition, since hazard_scan stops at the first null pointer. ------------------------------------------------------------------------ r1584 | sears.russell@gmail.com | 2012-02-10 02:45:30 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update array ------------------------------------------------------------------------ r1583 | sears.russell@gmail.com | 2012-02-10 00:04:50 -0500 (Fri, 10 Feb 2012) | 1 line skiplist update: concurrent, but broken ------------------------------------------------------------------------ r1582 | sears.russell@gmail.com | 2012-02-09 17:44:27 -0500 (Thu, 09 Feb 2012) | 1 line skip list implementation. Not concurrent yet. ------------------------------------------------------------------------ r1581 | sears.russell@gmail.com | 2012-02-08 13:33:29 -0500 (Wed, 08 Feb 2012) | 1 line Commit of a bunch of new, unused code: KISS random number generator, Hazard Pointers, SUX latches (untested) and bit twiddling for concurrent b-tree ------------------------------------------------------------------------ r1580 | sears.russell@gmail.com | 2012-01-17 19:17:37 -0500 (Tue, 17 Jan 2012) | 1 line fix typo ------------------------------------------------------------------------ r1579 | sears.russell@gmail.com | 2012-01-11 18:33:31 -0500 (Wed, 11 Jan 2012) | 1 line static build fixes for linux. hopefully these do not break macos... ------------------------------------------------------------------------ r1578 | sears.russell@gmail.com | 2012-01-09 19:13:34 -0500 (Mon, 09 Jan 2012) | 1 line fix cmake under linux ------------------------------------------------------------------------ r1577 | sears.russell@gmail.com | 2012-01-09 18:37:15 -0500 (Mon, 09 Jan 2012) | 1 line fix linux static binary compilation bugs ------------------------------------------------------------------------ r1576 | sears.russell | 2012-01-09 18:00:08 -0500 (Mon, 09 Jan 2012) | 1 line port to macos x ------------------------------------------------------------------------ r1575 | sears.russell | 2012-01-09 17:39:43 -0500 (Mon, 09 Jan 2012) | 1 line add missing _ from sync call name ------------------------------------------------------------------------ r1574 | sears.russell@gmail.com | 2012-01-09 14:26:31 -0500 (Mon, 09 Jan 2012) | 1 line add -rt flag to static builds ------------------------------------------------------------------------ r1573 | sears.russell@gmail.com | 2011-12-20 23:38:29 -0500 (Tue, 20 Dec 2011) | 1 line Simple makefile geared toward building libstasis.so and libstasis.a (and nothing else) ------------------------------------------------------------------------ r1572 | sears.russell@gmail.com | 2011-12-20 22:37:54 -0500 (Tue, 20 Dec 2011) | 1 line add some missing #include<config.h> lines
2012-04-21 16:52:31 +00:00
+ (level) * (sizeof(hazard_ptr) + sizeof(pthread_mutex_t)));
x->key = (hazard_ptr)key;
x->level = level;
x->refcount = 0;
pthread_mutex_init(&x->level_mut,0);
for(int i = 1; i <= level; i++) {
pthread_mutex_init(stasis_util_skiplist_get_forward_mutex(x, i), 0);
*stasis_util_skiplist_get_forward(x, i) = 0;
}
return (hazard_ptr)x;
}
static inline void stasis_util_skiplist_cleanup_tls(void * p) {
free(p);
}
static inline int stasis_util_skiplist_cmp_helper(
stasis_skiplist_t* list, stasis_skiplist_node_t *a, void * bkey) {
if(a == NULL) { return 1; }
void *akey = hazard_ref(list->ret_hazard, 1, &(a->key));
int ret;
if(akey == NULL) { ret = (bkey == NULL ? 0 : -1); }
else if(bkey == NULL) { ret = 1; }
else {ret = list->cmp(akey, bkey); }
hazard_release(list->ret_hazard, 1);
return ret;
}
static inline int stasis_util_skiplist_cmp_helper2(
stasis_skiplist_t* list, stasis_skiplist_node_t *a, stasis_skiplist_node_t * b) {
if(b == NULL) { return a == NULL ? 0 : -1; }
void *bkey = hazard_ref(list->ret_hazard, 2, &(b->key));
int ret = stasis_util_skiplist_cmp_helper(list, a, bkey);
hazard_release(list->ret_hazard, 2);
return ret;
}
static inline stasis_skiplist_t * stasis_util_skiplist_init(
int (*cmp)(const void*, const void*),
int (*finalize)(void *, void * nul)) {
stasis_skiplist_t * list = stasis_malloc(1, stasis_skiplist_t);
merge in changes from svn[r1572..r1601] ------------------------------------------------------------------------ r1601 | sears.russell@gmail.com | 2012-03-20 18:43:00 -0400 (Tue, 20 Mar 2012) | 1 line commit bLSM bloom filter to stasis/util, which is where it really belongs ------------------------------------------------------------------------ r1600 | sears.russell@gmail.com | 2012-03-04 01:58:38 -0500 (Sun, 04 Mar 2012) | 1 line fix memory leak in skiplist unit test (now it is valgrind clean) ------------------------------------------------------------------------ r1599 | sears.russell@gmail.com | 2012-03-04 01:58:05 -0500 (Sun, 04 Mar 2012) | 1 line fix typo in finalize type ------------------------------------------------------------------------ r1598 | sears.russell@gmail.com | 2012-03-04 00:59:59 -0500 (Sun, 04 Mar 2012) | 1 line add comparator and finalizer parameters to skiplist constructor ------------------------------------------------------------------------ r1597 | sears.russell@gmail.com | 2012-03-03 18:23:16 -0500 (Sat, 03 Mar 2012) | 1 line bugfixes for skiplist ------------------------------------------------------------------------ r1596 | sears.russell@gmail.com | 2012-03-02 15:05:07 -0500 (Fri, 02 Mar 2012) | 1 line updated concurrentSkipList. Seeing strange crashes ------------------------------------------------------------------------ r1595 | sears.russell@gmail.com | 2012-03-01 16:51:59 -0500 (Thu, 01 Mar 2012) | 1 line add progress reports ------------------------------------------------------------------------ r1594 | sears.russell@gmail.com | 2012-02-28 13:17:05 -0500 (Tue, 28 Feb 2012) | 1 line experimental support for automatic logfile preallocation ------------------------------------------------------------------------ r1593 | sears.russell@gmail.com | 2012-02-28 12:10:01 -0500 (Tue, 28 Feb 2012) | 1 line add histogram reporting to rawIOPS benchmark ------------------------------------------------------------------------ r1592 | sears.russell@gmail.com | 2012-02-24 16:31:36 -0500 (Fri, 24 Feb 2012) | 1 line userspace raid 0 implementation ------------------------------------------------------------------------ r1591 | sears.russell@gmail.com | 2012-02-12 01:47:25 -0500 (Sun, 12 Feb 2012) | 1 line add skiplist unit test, fix compile warnings ------------------------------------------------------------------------ r1590 | sears.russell@gmail.com | 2012-02-12 00:52:52 -0500 (Sun, 12 Feb 2012) | 1 line fix compile error ------------------------------------------------------------------------ r1589 | sears.russell@gmail.com | 2012-02-12 00:50:21 -0500 (Sun, 12 Feb 2012) | 1 line fix some bugs in hazard.h surrounding thread list management and overruns of R under high contention ------------------------------------------------------------------------ r1588 | sears.russell@gmail.com | 2012-02-11 14:23:10 -0500 (Sat, 11 Feb 2012) | 1 line add hazard pointer for get_lock. It was implicitly blowing away the hazard pointer protecting y in the caller ------------------------------------------------------------------------ r1587 | sears.russell@gmail.com | 2012-02-10 18:51:25 -0500 (Fri, 10 Feb 2012) | 1 line fix null pointer bug ------------------------------------------------------------------------ r1586 | sears.russell@gmail.com | 2012-02-10 18:03:39 -0500 (Fri, 10 Feb 2012) | 1 line add simple refcounting scheme to concurrentSkipList. This solves the problem where a deleted node points to another deleted node, and we only have a hazard pointer for the first node. ------------------------------------------------------------------------ r1585 | sears.russell@gmail.com | 2012-02-10 14:19:14 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update using the smallest free slot first. The old method left a race condition, since hazard_scan stops at the first null pointer. ------------------------------------------------------------------------ r1584 | sears.russell@gmail.com | 2012-02-10 02:45:30 -0500 (Fri, 10 Feb 2012) | 1 line add hazard pointers for update array ------------------------------------------------------------------------ r1583 | sears.russell@gmail.com | 2012-02-10 00:04:50 -0500 (Fri, 10 Feb 2012) | 1 line skiplist update: concurrent, but broken ------------------------------------------------------------------------ r1582 | sears.russell@gmail.com | 2012-02-09 17:44:27 -0500 (Thu, 09 Feb 2012) | 1 line skip list implementation. Not concurrent yet. ------------------------------------------------------------------------ r1581 | sears.russell@gmail.com | 2012-02-08 13:33:29 -0500 (Wed, 08 Feb 2012) | 1 line Commit of a bunch of new, unused code: KISS random number generator, Hazard Pointers, SUX latches (untested) and bit twiddling for concurrent b-tree ------------------------------------------------------------------------ r1580 | sears.russell@gmail.com | 2012-01-17 19:17:37 -0500 (Tue, 17 Jan 2012) | 1 line fix typo ------------------------------------------------------------------------ r1579 | sears.russell@gmail.com | 2012-01-11 18:33:31 -0500 (Wed, 11 Jan 2012) | 1 line static build fixes for linux. hopefully these do not break macos... ------------------------------------------------------------------------ r1578 | sears.russell@gmail.com | 2012-01-09 19:13:34 -0500 (Mon, 09 Jan 2012) | 1 line fix cmake under linux ------------------------------------------------------------------------ r1577 | sears.russell@gmail.com | 2012-01-09 18:37:15 -0500 (Mon, 09 Jan 2012) | 1 line fix linux static binary compilation bugs ------------------------------------------------------------------------ r1576 | sears.russell | 2012-01-09 18:00:08 -0500 (Mon, 09 Jan 2012) | 1 line port to macos x ------------------------------------------------------------------------ r1575 | sears.russell | 2012-01-09 17:39:43 -0500 (Mon, 09 Jan 2012) | 1 line add missing _ from sync call name ------------------------------------------------------------------------ r1574 | sears.russell@gmail.com | 2012-01-09 14:26:31 -0500 (Mon, 09 Jan 2012) | 1 line add -rt flag to static builds ------------------------------------------------------------------------ r1573 | sears.russell@gmail.com | 2011-12-20 23:38:29 -0500 (Tue, 20 Dec 2011) | 1 line Simple makefile geared toward building libstasis.so and libstasis.a (and nothing else) ------------------------------------------------------------------------ r1572 | sears.russell@gmail.com | 2011-12-20 22:37:54 -0500 (Tue, 20 Dec 2011) | 1 line add some missing #include<config.h> lines
2012-04-21 16:52:31 +00:00
list->levelCap = 32;
list->h = hazard_init(STASIS_SKIPLIST_HP_COUNT+list->levelCap,
STASIS_SKIPLIST_HP_COUNT, 250, stasis_util_skiplist_node_finalize, list);
list->finalize
= finalize ? finalize : stasis_util_skiplist_default_key_finalize;
list->ret_hazard = hazard_init(3, 3, 250, list->finalize, NULL);
list->levelHint = 1;
pthread_mutex_init(&list->levelHint_mut, 0);
list->header = stasis_util_skiplist_make_node(list->levelCap, NULL);
pthread_key_create(&(list->k), stasis_util_skiplist_cleanup_tls);
list->cmp = cmp;
return list;
}
static inline void stasis_util_skiplist_deinit(stasis_skiplist_t * list) {
hazard_deinit(list->h);
hazard_deinit(list->ret_hazard);
pthread_mutex_destroy(&list->levelHint_mut);
free((void*)list->header);
kiss_table_t * kiss = pthread_getspecific(list->k);
if(kiss) {
stasis_util_skiplist_cleanup_tls(kiss);
pthread_setspecific(list->k, 0);
}
pthread_key_delete(list->k);
free(list);
}
static inline void * stasis_util_skiplist_search(stasis_skiplist_t * list, void * searchKey) {
// the = 0 here are to silence GCC -O3 warnings.
stasis_skiplist_node_t *x, *y = 0;
int cmp = 0;
x = hazard_set(list->h,0,(void*)list->header);
for(int i = list->levelHint; i > 0; i--) {
y = hazard_ref(list->h,1,stasis_util_skiplist_get_forward(x, i));
while((cmp = stasis_util_skiplist_cmp_helper(list, y, searchKey)) < 0) {
x = hazard_set(list->h,0,(void*)y);
y = hazard_ref(list->h,1,stasis_util_skiplist_get_forward(x, i));
}
}
void * ret;
if(cmp == 0) {
ret = hazard_ref(list->ret_hazard, 0, &(y->key));
} else {
ret = 0;
hazard_release(list->ret_hazard, 0);
}
hazard_release(list->h,0);
hazard_release(list->h,1);
return ret;
}
static inline stasis_skiplist_node_t * stasis_util_skiplist_get_lock(
stasis_skiplist_t * list, stasis_skiplist_node_t * x, void * searchKey, int i) {
stasis_skiplist_node_t * z
= hazard_ref(list->h, 2, stasis_util_skiplist_get_forward(x, i));
while(stasis_util_skiplist_cmp_helper(list, z, searchKey) < 0) {
x = hazard_set(list->h, 0, (void*)z);
z = hazard_ref(list->h, 2, stasis_util_skiplist_get_forward(x, i));
}
pthread_mutex_lock(stasis_util_skiplist_get_forward_mutex(x, i));
z = hazard_ref(list->h, 2, stasis_util_skiplist_get_forward(x, i));
while(stasis_util_skiplist_cmp_helper(list, z, searchKey) < 0) {
// Should lock of z be here?
pthread_mutex_unlock(stasis_util_skiplist_get_forward_mutex(x, i));
x = hazard_set(list->h, 0, (void*)z);
// Note: lock of z was here (and it was called x)
pthread_mutex_lock(stasis_util_skiplist_get_forward_mutex(x, i));
z = hazard_ref(list->h, 2, stasis_util_skiplist_get_forward(x, i));
}
stasis_util_skiplist_assert(stasis_util_skiplist_cmp_helper2(list, x, (stasis_skiplist_node_t*)*stasis_util_skiplist_get_forward(x, i)) < 0);
hazard_release(list->h, 2);
return x;
}
/**
* Insert a value into the skiplist. Any existing value will be replaced.
* @return the old value or null if there was no such value.
*/
static inline void * stasis_util_skiplist_insert(stasis_skiplist_t * list, void * searchKey) {
stasis_skiplist_node_t * update[list->levelCap+1];
stasis_skiplist_node_t *x, *y;
IN:
x = hazard_set(list->h, 0, (void*)list->header);
int L = list->levelHint;
// for i = L downto 1
int i;
for(i = L+1; i > 1;) {
i--;
y = hazard_ref(list->h, 1, stasis_util_skiplist_get_forward(x, i));
while(stasis_util_skiplist_cmp_helper(list, y, searchKey) < 0) {
x = hazard_set(list->h, 0, (void*)y);
y = hazard_ref(list->h, 1, stasis_util_skiplist_get_forward(x, i));
}
update[i] = hazard_set(list->h, STASIS_SKIPLIST_HP_COUNT+(L-i), x);
}
// update[L..1] is set.
// h [HP_COUNT+[0..L-1] is set.
// Note get_lock grabs the hazard pointer for x.
x = stasis_util_skiplist_get_lock(list, x, searchKey, 1);
y = hazard_ref(list->h, 1, stasis_util_skiplist_get_forward(x, 1));
if(stasis_util_skiplist_cmp_helper(list, y, searchKey) == 0) {
pthread_mutex_unlock(stasis_util_skiplist_get_forward_mutex(x, 1));
pthread_mutex_lock(&y->level_mut);
x = hazard_ref(list->h, 0, stasis_util_skiplist_get_forward(y, 1));
int isGarbage = stasis_util_skiplist_cmp_helper(list, x, searchKey) < 0;
if(!isGarbage) {
void * oldKey;
do {
oldKey = hazard_ref(list->ret_hazard, 0, &(y->key));
} while(!__sync_bool_compare_and_swap(&(y->key), oldKey, searchKey));
pthread_mutex_unlock(&y->level_mut);
hazard_release(list->h, 0);
hazard_release(list->h, 1);
for(int i = L; i > 0; i--) {
hazard_release(list->h, (i-1)+STASIS_SKIPLIST_HP_COUNT);
// h [HP_COUNT+[L-1..0] is cleared
}
hazard_free(list->ret_hazard, oldKey);
return oldKey;
} else {
pthread_mutex_unlock(&y->level_mut);
// printf("insert landed on garbage node. retrying.\n");
goto IN;
}
}
hazard_ptr newnode = stasis_util_skiplist_make_node(stasis_util_skiplist_random_level(list->k), searchKey);
y = hazard_set(list->h, 1, (void*)newnode);
pthread_mutex_lock(&y->level_mut);
for(int i = L+1; i <= y->level; i++) {
update[i] = (void*)list->header;
}
// update[L+1..y->level] is set
for(int i = 1; i <= y->level; i++) {
if(i != 1) {
x = stasis_util_skiplist_get_lock(list, update[i], searchKey, i);
}
*stasis_util_skiplist_get_forward(y, i) = *stasis_util_skiplist_get_forward(x, i);
*stasis_util_skiplist_get_forward(x, i) = (hazard_ptr)y;
pthread_mutex_unlock(stasis_util_skiplist_get_forward_mutex(x, i));
}
pthread_mutex_unlock(&y->level_mut);
int L2 = list->levelHint;
if(L2 < list->levelCap && *stasis_util_skiplist_get_forward((void*)list->header, L2+1) != 0) {
if(pthread_mutex_trylock(&list->levelHint_mut) == 0) {
while(list->levelHint < list->levelCap &&
*stasis_util_skiplist_get_forward((void*)list->header, list->levelHint+1) != 0) {
list->levelHint = list->levelHint+1; // XXX atomics?
}
pthread_mutex_unlock(&list->levelHint_mut);
}
}
hazard_release(list->h, 0);
hazard_release(list->h, 1);
for(int i = L; i > 0; i--) {
// h [HP_COUNT+[L-1..0] is cleared
hazard_release(list->h, (i-1)+STASIS_SKIPLIST_HP_COUNT);
}
return NULL;
}
/**
* Delete a value from the list, returning it if it existed.
* @return The old value, or null.
*/
static inline void * stasis_util_skiplist_delete(stasis_skiplist_t * list, void * searchKey) {
stasis_skiplist_node_t * update[list->levelCap+1];
stasis_skiplist_node_t *x, *y;
x = hazard_set(list->h, 0, (void*)list->header);
int L = list->levelHint;
// for i = L downto 1
int i;
for(i = L+1; i > 1;) {
i--; // decrement after check, so that i is 1 at the end of the loop.
y = hazard_ref(list->h, 1, stasis_util_skiplist_get_forward(x, i));
while(stasis_util_skiplist_cmp_helper(list, y, searchKey) < 0) {
x = hazard_set(list->h, 0, (void*)y);
y = hazard_ref(list->h, 1, stasis_util_skiplist_get_forward(x, i));
}
update[i] = hazard_set(list->h, STASIS_SKIPLIST_HP_COUNT+(L-i), x);
}
// h[HP_COUNT+[0..L-1] is set
y = hazard_set(list->h, 1, (void*)x);
int isGarbage = 0;
int first = 1;
// do ... until equal and not garbage
do {
// Note: it is unsafe to copy y->i directly into y, since doing so releases
// the hazard pointer in race. Fortunately, we don't need x for anything
// until we overwrite it immediately below.
x = hazard_ref(list->h, 0, stasis_util_skiplist_get_forward(y, i));
if(first) {
first = 0;
} else {
// This unlock was not in the pseudocode, but seems to be necessary...
pthread_mutex_unlock(&y->level_mut);
}
y = hazard_set(list->h, 1, x);
if(stasis_util_skiplist_cmp_helper(list, y, searchKey) > 0) {
hazard_release(list->ret_hazard, 0);
hazard_release(list->h, 0);
hazard_release(list->h, 1);
for(i = L+1; i > 1;) {
i--;
hazard_release(list->h, (i-1)+STASIS_SKIPLIST_HP_COUNT);
// h[HP_COUNT+[L-1..0] is cleared
}
return NULL;
}
pthread_mutex_lock(&y->level_mut);
x = hazard_ref(list->h, 0, stasis_util_skiplist_get_forward(y, i));
// Note: this is a > in pseudocode, which lets equal nodes link back into themselves.
isGarbage = stasis_util_skiplist_cmp_helper2(list, y, x) > 0;
// pseudocode would unlock if garbage here. Moved unlock to top of loop.
} while(!(!isGarbage && stasis_util_skiplist_cmp_helper(list, y, searchKey) == 0));
for(int i = L+1; i <= y->level; i++) { update[i] = (void*)list->header; }
for(int i = y->level; i > 0; i--) {
x = stasis_util_skiplist_get_lock(list, update[i], searchKey, i);
pthread_mutex_lock(stasis_util_skiplist_get_forward_mutex(y, i));
stasis_util_skiplist_assert(*stasis_util_skiplist_get_forward(x, i) == (intptr_t)y);
__sync_fetch_and_add(&x->refcount, 1);
*stasis_util_skiplist_get_forward(x, i) = *stasis_util_skiplist_get_forward(y, i);
*stasis_util_skiplist_get_forward(y, i) = (hazard_ptr)x;
stasis_util_skiplist_assert(stasis_util_skiplist_cmp_helper2(list, y, x) > 0); // assert is garbage
pthread_mutex_unlock(stasis_util_skiplist_get_forward_mutex(x, i));
pthread_mutex_unlock(stasis_util_skiplist_get_forward_mutex(y, i));
}
void * oldKey = hazard_ref(list->ret_hazard, 0, &(y->key));
pthread_mutex_unlock(&y->level_mut);
int L2 = list->levelHint;
if(L2 > 1 && *stasis_util_skiplist_get_forward((void*)list->header, L2) == 0) {
if(pthread_mutex_trylock(&list->levelHint_mut) == 0) {
while(list->levelHint > 1 && (stasis_skiplist_node_t*)*stasis_util_skiplist_get_forward((void*)list->header, list->levelHint) == 0) {
list->levelHint = list->levelHint - 1;
}
pthread_mutex_unlock(&list->levelHint_mut);
}
}
hazard_release(list->h, 0);
hazard_release(list->h, 1);
for(i = L+1; i > 1;) {
i--;
hazard_release(list->h, (i-1)+STASIS_SKIPLIST_HP_COUNT);
// h[HP_COUNT+[L-1..0] is cleared
}
// oldKey will be freed by y's finalizer
hazard_free(list->h, y);
return oldKey;
}
void stasis_skiplist_release(stasis_skiplist_t * list) {
hazard_release(list->ret_hazard, 0);
}
END_C_DECLS
#endif /* CONCURRENTSKIPLIST_H_ */